Sodium in PDB 5zs6: Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2

The structure of Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2, PDB code: 5zs6 was solved by S.Bhandari, K.Suguna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	64.55 / 2.81
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	91.290, 91.290, 91.290, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25

The structure of Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2 (pdb code 5zs6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2, PDB code: 5zs6:

Sodium binding site 1 out of 1 in the Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M: Form-2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na207 b:52.4 occ:1.00 O1 A:PEG201 2.7 64.1 1.0 H21 A:PEG201 3.2 78.8 1.0 H22 A:PEG201 3.4 78.8 1.0 HO1 A:PEG201 3.4 77.4 1.0 C1 A:PEG201 3.5 66.7 1.0 C2 A:PEG201 3.5 65.3 1.0 H12 A:PEG201 3.6 80.5 1.0 OG A:SER80 4.1 42.6 1.0 H11 A:PEG201 4.4 80.5 1.0 CB A:SER80 4.4 33.4 1.0 CG A:MET77 4.6 28.0 1.0 CB A:VAL71 4.9 34.4 1.0 O2 A:PEG201 4.9 63.9 1.0

S.Bhandari, S.Biswas, A.Chaudhary, S.Dutta, K.Suguna. Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M. Proteins V. 87 365 2019.
ISSN: ESSN 1097-0134
PubMed: 30632633
DOI: 10.1002/PROT.25657