Sodium in PDB 5zs3: Small Heat Shock Protein From M. Marinum:Form-1

The structure of Small Heat Shock Protein From M. Marinum:Form-1, PDB code: 5zs3 was solved by S.Bhandari, K.Suguna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	64.45 / 2.00
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	91.140, 91.140, 91.140, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.5

The structure of Small Heat Shock Protein From M. Marinum:Form-1 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Small Heat Shock Protein From M. Marinum:Form-1 (pdb code 5zs3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Small Heat Shock Protein From M. Marinum:Form-1, PDB code: 5zs3:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Small Heat Shock Protein From M. Marinum:Form-1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Small Heat Shock Protein From M. Marinum:Form-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:47.3 occ:1.00 O A:GLU76 2.4 33.0 1.0 CG A:LEU78 3.5 46.3 1.0 C A:GLU76 3.6 33.4 1.0 CD2 A:LEU78 3.9 49.3 1.0 N A:LEU78 4.0 29.1 1.0 CD1 A:LEU78 4.1 53.2 1.0 CG A:GLU76 4.1 64.9 1.0 C A:MSE77 4.3 35.0 1.0 CA A:MSE77 4.4 28.1 1.0 CB A:GLU76 4.4 36.2 1.0 N A:MSE77 4.4 31.1 1.0 CA A:GLU76 4.6 34.1 1.0 CB A:LEU78 4.6 31.4 1.0 CA A:LEU78 4.8 26.0 1.0

Sodium binding site 2 out of 2 in the Small Heat Shock Protein From M. Marinum:Form-1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Small Heat Shock Protein From M. Marinum:Form-1 within 5.0Å range: probe atom residue distance (Å) B Occ U:Na101 b:57.9 occ:1.00 O U:LEU4 2.3 58.1 1.0 N A:VAL92 2.7 36.5 1.0 C U:LEU4 3.4 51.3 1.0 CA A:LEU91 3.4 31.3 1.0 CD1 U:LEU3 3.5 36.3 1.0 C A:LEU91 3.5 32.4 1.0 CA A:VAL92 3.6 45.3 1.0 CB A:VAL92 3.7 46.3 1.0 O A:VAL92 3.7 39.9 1.0 CB U:LEU4 3.8 50.3 1.0 N U:LEU4 3.8 45.0 1.0 O A:GLN90 3.8 33.7 1.0 CA U:LEU4 3.8 45.9 1.0 O U:HOH201 3.8 55.8 1.0 C A:VAL92 4.1 39.6 1.0 CG2 A:VAL92 4.2 49.4 1.0 CB A:LEU91 4.3 36.3 1.0 CG U:LEU3 4.3 41.4 1.0 N A:LEU91 4.5 29.4 1.0 N U:PRO5 4.5 63.3 1.0 C A:GLN90 4.6 37.0 1.0 CD2 A:LEU91 4.6 53.6 1.0 O A:LEU91 4.7 37.9 1.0 C U:PRO5 4.9 67.0 1.0 C U:LEU3 4.9 44.4 1.0 CA U:PRO5 4.9 68.1 1.0 CG U:LEU4 4.9 53.1 1.0

S.Bhandari, S.Biswas, A.Chaudhary, S.Dutta, K.Suguna. Dodecameric Structure of A Small Heat Shock Protein From Mycobacterium Marinum M. Proteins V. 87 365 2019.
ISSN: ESSN 1097-0134
PubMed: 30632633
DOI: 10.1002/PROT.25657