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Sodium in PDB 5zpf: Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3)
Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3)
All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3):
1.4.3.21;
1.4.3.21;
Protein crystallography data
The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3), PDB code: 5zpf
was solved by
T.Murakawa,
S.Baba,
Y.Kawano,
H.Hayashi,
T.Yano,
K.Tanizawa,
T.Kumasaka,
M.Yamamoto,
T.Okajima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.67 / 1.76 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 193.379, 64.225, 158.773, 90.00, 117.08, 90.00 |
| R / Rfree (%) | 15.5 / 17.9 |
Other elements in 5zpf:
The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3) also contains other interesting chemical elements:
| Copper | (Cu) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3)
(pdb code 5zpf). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3), PDB code: 5zpf:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3), PDB code: 5zpf:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 5zpf
Go back to
Sodium Binding Sites List in 5zpf
Sodium binding site 1 out
of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3) within 5.0Å range:
|
Sodium binding site 2 out of 2 in 5zpf
Go back to
Sodium Binding Sites List in 5zpf
Sodium binding site 2 out
of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 6 at 288 K (3) within 5.0Å range:
|
Reference:
T.Murakawa,
S.Baba,
Y.Kawano,
H.Hayashi,
T.Yano,
T.Kumasaka,
M.Yamamoto,
K.Tanizawa,
T.Okajima.
In Crystallothermodynamic Analysis of Conformational Change of the Topaquinone Cofactor in Bacterial Copper Amine Oxidase Proc. Natl. Acad. Sci. V. 116 135 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
Page generated: Tue Dec 15 11:54:37 2020
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
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