Sodium »
PDB 5zo9-5zwy »
5zp4 »
Sodium in PDB 5zp4: Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2):
1.4.3.21;
1.4.3.21;
Protein crystallography data
The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2), PDB code: 5zp4
was solved by
T.Murakawa,
S.Baba,
Y.Kawano,
H.Hayashi,
T.Yano,
K.Tanizawa,
T.Kumasaka,
M.Yamamoto,
T.Okajima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 35.14 / 1.80 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 193.731, 64.838, 158.974, 90.00, 117.20, 90.00 |
| R / Rfree (%) | 14.5 / 16.8 |
Other elements in 5zp4:
The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2) also contains other interesting chemical elements:
| Copper | (Cu) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
(pdb code 5zp4). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2), PDB code: 5zp4:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2), PDB code: 5zp4:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 5zp4
Go back to
Sodium Binding Sites List in 5zp4
Sodium binding site 1 out
of 3 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2) within 5.0Å range:
|
Sodium binding site 2 out of 3 in 5zp4
Go back to
Sodium Binding Sites List in 5zp4
Sodium binding site 2 out
of 3 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2) within 5.0Å range:
|
Sodium binding site 3 out of 3 in 5zp4
Go back to
Sodium Binding Sites List in 5zp4
Sodium binding site 3 out
of 3 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at pH 10 at 288 K (2) within 5.0Å range:
|
Reference:
T.Murakawa,
S.Baba,
Y.Kawano,
H.Hayashi,
T.Yano,
T.Kumasaka,
M.Yamamoto,
K.Tanizawa,
T.Okajima.
In Crystallothermodynamic Analysis of Conformational Change of the Topaquinone Cofactor in Bacterial Copper Amine Oxidase. Proc. Natl. Acad. Sci. V. 116 135 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
Page generated: Tue Oct 8 01:34:56 2024
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
