Sodium in PDB 5zmi: Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine.

All present enzymatic activity of Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine.:
2.4.2.7;

The structure of Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine., PDB code: 5zmi was solved by G.C.Pavithra, G.C.Fox, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.57 / 2.05
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	58.958, 78.650, 53.679, 90.00, 115.20, 90.00
R / Rfree (%)	18.6 / 22.8

The binding sites of Sodium atom in the Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine. (pdb code 5zmi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine., PDB code: 5zmi:

Sodium binding site 1 out of 1 in the Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Aprt From Y. Pseudotuberculosis in Complex with Adenine. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:78.3 occ:1.00 O A:ILE120 2.4 57.7 1.0 O A:THR117 2.4 60.5 1.0 C A:THR117 3.6 57.8 1.0 C A:ILE120 3.6 60.8 1.0 CA A:GLN121 4.2 71.5 1.0 CA A:ASP118 4.3 64.6 1.0 OE1 A:GLN121 4.3 90.1 1.0 N A:GLN121 4.3 66.4 1.0 N A:ASP118 4.3 59.8 1.0 CB A:LEU149 4.4 58.5 1.0 O A:LEU149 4.5 61.4 1.0 CD2 A:LEU149 4.5 58.6 1.0 C A:ASP118 4.5 62.6 1.0 CB A:GLN121 4.6 76.2 1.0 N A:ILE120 4.6 54.1 1.0 CA A:THR117 4.6 57.1 1.0 CA A:ILE120 4.7 56.7 1.0 O A:ASP118 4.8 57.9 1.0 CG A:LEU149 4.9 57.6 1.0 CB A:THR117 5.0 59.5 1.0

G.C.Pavithra, U.A.Ramagopal. Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis To Be Published.