Sodium in PDB 5zbi: Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis

The structure of Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis, PDB code: 5zbi was solved by Y.H.Wong, J.Lescar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.42 / 2.09
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	184.470, 62.080, 82.910, 90.00, 106.81, 90.00
R / Rfree (%)	18.9 / 22.5

The binding sites of Sodium atom in the Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis (pdb code 5zbi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis, PDB code: 5zbi:

Sodium binding site 1 out of 1 in the Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Asparaginyl Endopeptidases From Viola Canadensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:52.0 occ:1.00 O A:TYR434 2.3 24.6 1.0 O A:SER430 2.5 25.8 1.0 NE2 A:HIS374 2.9 27.9 1.0 CA A:LEU431 3.0 20.9 1.0 N A:TYR434 3.0 28.9 1.0 C A:LEU431 3.0 25.7 1.0 C A:SER430 3.2 25.6 1.0 OE1 A:GLU433 3.2 52.6 1.0 C A:TYR434 3.3 25.6 1.0 O A:LEU431 3.4 26.8 1.0 N A:LEU431 3.4 21.4 1.0 N A:SER432 3.5 23.7 1.0 N A:GLU433 3.6 31.3 1.0 CA A:TYR434 3.6 25.8 1.0 CE1 A:HIS374 3.8 27.3 1.0 CD2 A:HIS374 3.9 28.4 1.0 CB A:GLU433 4.0 33.5 1.0 C A:GLU433 4.0 35.2 1.0 CA A:GLU433 4.1 31.4 1.0 C A:SER432 4.2 32.6 1.0 O A:HOH719 4.2 40.5 1.0 CB A:TYR434 4.2 25.1 1.0 CG2 A:VAL378 4.3 25.5 1.0 CD A:GLU433 4.3 72.4 1.0 CB A:LEU431 4.3 20.2 1.0 CA A:SER432 4.4 25.1 1.0 N A:GLY435 4.5 21.1 1.0 CA A:SER430 4.5 24.8 1.0 CG A:GLU433 4.7 51.0 1.0 CB A:SER430 4.8 29.4 1.0 OG A:SER430 4.9 36.0 1.0 CD2 A:LEU431 4.9 20.9 1.0 ND1 A:HIS374 5.0 28.5 1.0

Y.H.Wong, J.Lescar. Crystal Structure of Peptide Asparaginyl Ligase From Viola Canadensis To Be Published.