Sodium in PDB 5zb2: Crystal Structure of RAD7 and ELC1 Complex in Yeast

The structure of Crystal Structure of RAD7 and ELC1 Complex in Yeast, PDB code: 5zb2 was solved by T.Jiang, L.Liu, Y.Huo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.35 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	110.921, 67.764, 69.015, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 22.4

The binding sites of Sodium atom in the Crystal Structure of RAD7 and ELC1 Complex in Yeast (pdb code 5zb2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of RAD7 and ELC1 Complex in Yeast, PDB code: 5zb2:

Sodium binding site 1 out of 1 in the Crystal Structure of RAD7 and ELC1 Complex in Yeast


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of RAD7 and ELC1 Complex in Yeast within 5.0Å range: probe atom residue distance (Å) B Occ A:Na610 b:45.9 occ:1.00 CAR A:9FO609 2.7 51.4 0.5 OAV A:9FO609 3.0 58.1 0.5 OAY A:9FO609 3.1 55.5 0.5 CAK A:9FO609 3.1 53.6 0.5 OAG A:9FO609 3.1 57.5 0.5 CAO A:9FO609 3.2 49.5 0.5 OAM A:9FO609 3.2 50.7 0.5 CAW A:9FO609 3.3 58.1 0.5 CAU A:9FO609 3.4 56.9 0.5 OAJ A:9FO609 3.5 54.9 0.5 CAX A:9FO609 3.6 58.2 0.5 OAP A:9FO609 3.6 47.4 0.5 CAL A:9FO609 3.6 52.7 0.5 CAI A:9FO609 3.6 55.7 0.5 CAE A:9FO609 3.7 55.1 0.5 CAQ A:9FO609 3.7 49.4 0.5 CBC A:9FO609 3.7 51.9 0.5 CAF A:9FO609 3.7 56.4 0.5 OAS A:9FO609 3.8 51.6 0.5 CAN A:9FO609 3.8 48.5 0.5 CAT A:9FO609 3.8 54.4 0.5 CAZ A:9FO609 3.8 53.8 0.5 CAH A:9FO609 4.0 57.7 0.5 CBA A:9FO609 4.2 52.7 0.5 OBB A:9FO609 4.4 52.0 0.5 CBD A:9FO609 4.9 50.5 0.5

L.Liu, Y.Huo, J.Li, T.Jiang. Crystal Structure of the Yeast RAD7-ELC1 Complex and Assembly of the RAD7-RAD16-ELC1-CUL3 Complex. Dna Repair (Amst.) V. 77 1 2019.
ISSN: ISSN 1568-7856
PubMed: 30840920
DOI: 10.1016/J.DNAREP.2019.02.012