Sodium in PDB 5z96: Structure of the Mouse TRPC4 Ion Channel

The binding sites of Sodium atom in the Structure of the Mouse TRPC4 Ion Channel (pdb code 5z96). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Structure of the Mouse TRPC4 Ion Channel, PDB code: 5z96:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in the Structure of the Mouse TRPC4 Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Mouse TRPC4 Ion Channel within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:30.0 occ:1.00 OE2 A:GLU417 2.6 77.1 1.0 OD2 A:ASP438 2.8 56.5 1.0 OE1 A:GLN420 2.8 84.0 1.0 OD1 A:ASN435 3.0 67.0 1.0 CD A:GLU417 3.5 77.1 1.0 CD A:GLN420 3.7 84.0 1.0 OE1 A:GLU417 3.7 77.1 1.0 NE2 A:GLN420 3.8 84.0 1.0 CG A:ASP438 3.9 56.5 1.0 CG A:ASN435 4.2 67.0 1.0 CB A:ASP438 4.4 56.5 1.0 NH2 A:ARG491 4.8 59.3 1.0 OD1 A:ASP438 4.8 56.5 1.0 CG A:GLU417 4.9 77.1 1.0 CA A:ASN435 4.9 67.0 1.0

Sodium binding site 2 out of 5 in the Structure of the Mouse TRPC4 Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Mouse TRPC4 Ion Channel within 5.0Å range: probe atom residue distance (Å) B Occ A:Na804 b:30.0 occ:1.00 N B:GLY577 4.3 53.5 1.0 CA B:GLY577 4.3 53.5 1.0 N A:GLY577 4.6 52.6 1.0 CA A:GLY577 4.6 52.6 1.0 CA D:GLY577 4.6 52.5 1.0 N D:GLY577 4.6 52.5 1.0 N C:GLY577 4.8 53.9 1.0 CA C:GLY577 4.8 53.9 1.0

Sodium binding site 3 out of 5 in the Structure of the Mouse TRPC4 Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of the Mouse TRPC4 Ion Channel within 5.0Å range: probe atom residue distance (Å) B Occ B:Na804 b:30.0 occ:1.00 OE2 B:GLU417 2.6 77.1 1.0 OE1 B:GLN420 2.6 84.1 1.0 OD2 B:ASP438 3.0 52.2 1.0 OD1 B:ASN435 3.2 64.7 1.0 CD B:GLU417 3.5 77.1 1.0 CD B:GLN420 3.5 84.1 1.0 NE2 B:GLN420 3.7 84.1 1.0 OE1 B:GLU417 3.8 77.1 1.0 CG B:ASP438 4.1 52.2 1.0 CG B:ASN435 4.4 64.7 1.0 CB B:ASP438 4.6 52.2 1.0 CG B:GLU417 4.9 77.1 1.0 NH2 B:ARG491 4.9 60.0 1.0 CG B:GLN420 5.0 84.1 1.0 OD1 B:ASP438 5.0 52.2 1.0

Sodium binding site 4 out of 5 in the Structure of the Mouse TRPC4 Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of the Mouse TRPC4 Ion Channel within 5.0Å range: probe atom residue distance (Å) B Occ C:Na802 b:30.0 occ:1.00 OE2 C:GLU417 2.6 76.0 1.0 OD2 C:ASP438 2.8 54.1 1.0 OE1 C:GLN420 2.9 83.4 1.0 OD1 C:ASN435 3.3 63.8 1.0 CD C:GLU417 3.6 76.0 1.0 CD C:GLN420 3.8 83.4 1.0 OE1 C:GLU417 3.9 76.0 1.0 CG C:ASP438 3.9 54.1 1.0 NE2 C:GLN420 4.0 83.4 1.0 CG C:ASN435 4.5 63.8 1.0 CB C:ASP438 4.5 54.1 1.0 NH2 C:ARG491 4.7 61.0 1.0 OD1 C:ASP438 4.8 54.1 1.0 CG C:GLU417 4.9 76.0 1.0 NH1 C:ARG491 5.0 61.0 1.0

Sodium binding site 5 out of 5 in the Structure of the Mouse TRPC4 Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Structure of the Mouse TRPC4 Ion Channel within 5.0Å range: probe atom residue distance (Å) B Occ D:Na803 b:30.0 occ:1.00 OE2 D:GLU417 2.5 75.9 1.0 OD2 D:ASP438 2.7 54.6 1.0 OE1 D:GLN420 2.9 82.7 1.0 OD1 D:ASN435 3.2 65.1 1.0 CD D:GLU417 3.5 75.9 1.0 CD D:GLN420 3.8 82.7 1.0 OE1 D:GLU417 3.8 75.9 1.0 CG D:ASP438 3.8 54.6 1.0 NE2 D:GLN420 3.9 82.7 1.0 CG D:ASN435 4.4 65.1 1.0 CB D:ASP438 4.5 54.6 1.0 NH2 D:ARG491 4.7 59.0 1.0 OD1 D:ASP438 4.8 54.6 1.0 CG D:GLU417 4.9 75.9 1.0 CA D:ASN435 5.0 65.1 1.0

J.Duan, J.Li, B.Zeng, G.L.Chen, X.Peng, Y.Zhang, J.Wang, D.E.Clapham, Z.Li, J.Zhang. Structure of the Mouse TRPC4 Ion Channel. Nat Commun V. 9 3102 2018.
ISSN: ESSN 2041-1723
PubMed: 30082700
DOI: 10.1038/S41467-018-05247-9