Sodium in PDB 5z39: Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II

The structure of Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II, PDB code: 5z39 was solved by T.Miyagawa, H.Koteishi, Y.Kamimura, Y.Miyanaga, K.Takeshita, A.Nakagawa, M.Ueda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.09 / 2.74
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	33.468, 43.618, 101.681, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 27

The binding sites of Sodium atom in the Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II (pdb code 5z39). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II, PDB code: 5z39:

Sodium binding site 1 out of 1 in the Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C Terminal Region of G-Protein Interacting Protein 1 (GIP1) From Dictyostelium Discoideum Form II within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:47.9 occ:1.00 O A:GLU288 2.9 53.5 1.0 N A:ASP292 3.2 50.7 1.0 CA A:ILE289 3.3 55.1 1.0 CB A:ASP291 3.3 57.6 1.0 C A:GLU288 3.4 51.6 1.0 CG A:ASP292 3.4 52.0 1.0 C A:ILE289 3.4 53.3 1.0 OD1 A:ASP292 3.4 57.7 1.0 N A:ASP291 3.5 51.0 1.0 OD2 A:ASP291 3.5 65.2 1.0 O A:ILE289 3.5 51.1 1.0 N A:ILE289 3.6 51.6 1.0 OD2 A:ASP292 3.7 47.4 1.0 CA A:ASP291 3.7 53.3 1.0 CG A:ASP291 3.8 58.3 1.0 CB A:ASP292 3.9 47.4 1.0 C A:ASP291 3.9 49.2 1.0 N A:GLU290 4.1 56.0 1.0 CA A:ASP292 4.1 44.5 1.0 CA A:GLU288 4.5 54.5 1.0 C A:GLU290 4.5 53.1 1.0 CB A:ILE289 4.7 56.0 1.0 CA A:GLU290 4.9 55.6 1.0 OD1 A:ASP291 4.9 50.4 1.0

T.Miyagawa, H.Koteishi, Y.Kamimura, Y.Miyanaga, K.Takeshita, A.Nakagawa, M.Ueda. Structural Basis of GIP1 For Cytosolic Sequestration of G Protein in Wide-Range Chemotaxis Nat Commun V. 9 4635 2018.
ISSN: ESSN 2041-1723
PubMed: 30401901
DOI: 10.1038/S41467-018-07035-X