Sodium in PDB 5yz3: Crystal Structure of T2R-Ttl-28 Complex

The structure of Crystal Structure of T2R-Ttl-28 Complex, PDB code: 5yz3 was solved by Y.Yu, Q.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.62 / 2.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	104.887, 157.496, 180.904, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 23.4

The structure of Crystal Structure of T2R-Ttl-28 Complex also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of T2R-Ttl-28 Complex (pdb code 5yz3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of T2R-Ttl-28 Complex, PDB code: 5yz3:

Sodium binding site 1 out of 1 in the Crystal Structure of T2R-Ttl-28 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of T2R-Ttl-28 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na505 b:55.5 occ:1.00 O B:HOH644 2.5 36.1 1.0 O B:HOH701 3.4 37.8 1.0 OD1 B:ASP118 3.5 36.8 1.0 HB3 B:ASP114 3.6 44.8 1.0 OD2 B:ASP118 4.0 44.5 1.0 CG B:ASP118 4.2 42.3 1.0 CB B:ASP114 4.5 37.3 1.0 HH12 B:ARG121 4.7 47.3 1.0 CG B:ASP114 4.9 43.8 1.0 O B:ASP114 4.9 33.9 1.0

N.Ning, Y.Yu, M.Wu, R.Zhang, T.Zhang, C.Zhu, L.Huang, C.H.Yun, C.H.Benes, J.Zhang, X.Deng, Q.Chen, R.Ren. A Novel Microtubule Inhibitor Overcomes Multidrug Resistance in Tumors. Cancer Res. V. 78 5949 2018.
ISSN: ESSN 1538-7445
PubMed: 30135190
DOI: 10.1158/0008-5472.CAN-18-0455