Sodium in PDB 5wpt: Cryo-Em Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs in Closed II Conformation at 3.75 Angstrom Resolution

The binding sites of Sodium atom in the Cryo-Em Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs in Closed II Conformation at 3.75 Angstrom Resolution (pdb code 5wpt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs in Closed II Conformation at 3.75 Angstrom Resolution, PDB code: 5wpt:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs in Closed II Conformation at 3.75 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs in Closed II Conformation at 3.75 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:0.0 occ:1.00 O A:ASP471 4.7 62.6 1.0 O C:ASP471 4.7 69.4 1.0 O D:ASP471 4.7 64.4 1.0 O B:ASP471 4.7 64.7 1.0

Q.Chen, J.She, W.Zeng, J.Guo, H.Xu, X.C.Bai, Y.Jiang. Structure of Mammalian Endolysosomal TRPML1 Channel in Nanodiscs. Nature V. 550 415 2017.
ISSN: ISSN 0028-0836
PubMed: 29019981
DOI: 10.1038/NATURE24035