Sodium in PDB 5ufy: Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain

The structure of Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain, PDB code: 5ufy was solved by D.Sychantha, C.Jones, D.J.Little, P.J.Moynihan, H.Robinson, N.F.Galley, D.I.Roper, C.G.Dowson, P.L.Howell, A.J.Clarke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.05 / 1.12
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	70.203, 70.203, 135.577, 90.00, 90.00, 90.00
R / Rfree (%)	15 / 16.8

The binding sites of Sodium atom in the Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain (pdb code 5ufy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain, PDB code: 5ufy:

Sodium binding site 1 out of 1 in the Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Streptococcus Pneumoniae Peptidoglycan O- Acetyltransferase A (Oata) C-Terminal Catalytic Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:9.3 occ:1.00 O A:HOH952 2.4 15.8 1.0 O A:ALA542 2.4 12.1 1.0 O A:ILE548 2.4 10.1 1.0 O A:THR545 2.6 9.9 1.0 HA A:PRO546 3.5 12.0 1.0 H A:ILE548 3.6 10.5 1.0 C A:THR545 3.6 9.7 1.0 C A:ALA542 3.6 10.7 1.0 C A:ILE548 3.6 8.9 1.0 O A:HOH872 3.8 13.7 1.0 H A:THR545 3.9 12.3 1.0 HB A:ILE548 4.0 12.9 1.0 HA A:THR549 4.1 11.5 1.0 HA A:ALA542 4.1 12.6 1.0 HA A:GLU543 4.1 14.6 1.0 CA A:PRO546 4.1 10.0 1.0 N A:ILE548 4.3 8.8 1.0 C A:PRO546 4.3 9.4 1.0 HB1 A:ALA542 4.3 14.3 1.0 N A:THR545 4.3 10.3 1.0 N A:PRO546 4.3 8.9 1.0 O A:PRO546 4.3 10.4 1.0 O A:GLU543 4.4 13.2 1.0 CA A:ALA542 4.4 10.5 1.0 CA A:ILE548 4.4 9.0 1.0 C A:GLU543 4.5 11.2 1.0 CA A:THR545 4.5 9.9 1.0 N A:GLU543 4.6 11.5 1.0 CA A:GLU543 4.6 12.1 1.0 HB A:THR545 4.6 11.8 1.0 N A:THR549 4.6 8.6 1.0 CB A:ILE548 4.7 10.7 1.0 CA A:THR549 4.8 9.6 1.0 O A:HOH937 4.9 19.3 1.0 CB A:ALA542 4.9 11.9 1.0 HG22 A:ILE548 4.9 14.5 1.0 N A:TYR547 5.0 8.8 1.0

D.Sychantha, C.S.Jones, D.J.Little, P.J.Moynihan, H.Robinson, N.F.Galley, D.I.Roper, C.G.Dowson, P.L.Howell, A.J.Clarke. In Vitro Characterization of the Antivirulence Target of Gram-Positive Pathogens, Peptidoglycan O-Acetyltransferase A (Oata). Plos Pathog. V. 13 06667 2017.
ISSN: ESSN 1553-7374
PubMed: 29077761
DOI: 10.1371/JOURNAL.PPAT.1006667