Sodium in PDB 5ucq: The Structure of Archaeal Inorganic Pyrophosphatase in Complex with Pyrophosphate

Enzymatic activity of The Structure of Archaeal Inorganic Pyrophosphatase in Complex with Pyrophosphate

Protein crystallography data

Other elements in 5ucq:

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 5ucq

Sodium Binding Sites List in 5ucq

Sodium binding site 1 out of 1 in the The Structure of Archaeal Inorganic Pyrophosphatase in Complex with Pyrophosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Archaeal Inorganic Pyrophosphatase in Complex with Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Na209 b:16.7 occ:1.00 O1 B:EDO206 2.3 16.7 0.2 O5 B:POP208 2.3 9.0 0.4 O2 B:EDO205 2.3 51.5 0.7 O1 B:POP208 2.4 13.8 0.4 C1 B:EDO205 2.5 17.7 0.3 OE2 B:GLU32 2.6 12.5 0.6 O5 B:POP208 2.7 9.2 0.6 C1 B:EDO205 2.8 52.5 0.7 C2 B:EDO205 2.8 51.5 0.7 O1 B:EDO205 3.2 17.6 0.3 O B:POP208 3.2 6.5 0.6 C1 B:EDO206 3.3 20.6 0.2 P2 B:POP208 3.4 10.7 0.4 P2 B:POP208 3.5 6.3 0.6 CD B:GLU32 3.6 13.9 0.6 P1 B:POP208 3.7 12.5 0.4 O4 B:POP208 3.8 9.4 0.4 O1 B:EDO206 3.8 71.2 0.8 O B:POP208 3.8 7.3 0.4 O B:HOH326 3.8 41.8 1.0 C2 B:EDO206 3.8 21.4 0.2 C2 B:EDO205 3.9 23.8 0.3 OE1 B:GLU32 3.9 14.1 0.6 O1 B:EDO207 3.9 14.0 0.3 O1 B:EDO205 4.0 54.1 0.7 NZ B:LYS30 4.1 9.3 1.0 O2 B:EDO205 4.2 24.9 0.3 O4 B:POP208 4.2 6.5 0.6 O2 B:EDO206 4.2 71.5 0.8 C2 B:EDO206 4.3 71.3 0.8 OE1 B:GLU32 4.4 20.9 0.4 NH2 B:ARG44 4.4 9.8 1.0 OD1 B:ASP43 4.4 15.9 1.0 P1 B:POP208 4.4 7.7 0.6 C1 B:EDO207 4.4 12.5 0.3 CG B:ASP43 4.5 11.4 1.0 O2 B:POP208 4.6 11.1 0.4 O3 B:POP208 4.6 8.3 0.6 OD2 B:ASP43 4.6 13.9 1.0 O3 B:POP208 4.6 14.3 0.4 O6 B:POP208 4.7 11.3 0.4 O2 B:POP208 4.7 8.6 0.6 C1 B:EDO206 4.7 70.7 0.8 CE B:LYS30 4.7 9.2 1.0 OD2 B:ASP68 4.7 34.6 0.7 O6 B:POP208 4.8 6.0 0.6 CG B:GLU32 4.9 11.2 0.6 OD2 B:ASP68 5.0 25.8 0.3

Reference: