Sodium in PDB 5u8e: Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus

All present enzymatic activity of Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus:
2.7.3.3;

The structure of Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus, PDB code: 5u8e was solved by A.A.Lopez-Zavala, C.F.Garcia, J.Hernadez-Paredes, R.R.Sotelo-Mundo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.31 / 2.18
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.131, 61.117, 60.991, 90.00, 95.86, 90.00
R / Rfree (%)	17.2 / 22.6

The binding sites of Sodium atom in the Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus (pdb code 5u8e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus, PDB code: 5u8e:

Sodium binding site 1 out of 1 in the Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Substrate-Free Arginine Kinase From Spider Polybetes Pythagoricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:41.4 occ:1.00 O A:HOH746 2.4 39.5 1.0 O A:HOH725 2.6 39.6 1.0 O A:HIS185 3.9 22.3 1.0 CD2 A:LEU219 4.2 12.7 1.0 O A:HOH506 4.6 35.7 1.0 CZ2 A:TRP221 4.6 14.2 1.0 CH2 A:TRP221 4.8 17.7 1.0 CD1 A:ILE231 4.8 26.0 1.0 NE2 A:HIS124 4.9 29.2 1.0

A.Laino, A.A.Lopez-Zavala, K.D.Garcia-Orozco, J.S.Carrasco-Miranda, M.Santana, V.Stojanoff, R.R.Sotelo-Mundo, C.F.Garcia. Biochemical and Structural Characterization of A Novel Arginine Kinase From the Spider Polybetes Pythagoricus. Peerj V. 5 E3787 2017.
ISSN: ESSN 2167-8359
PubMed: 28924503
DOI: 10.7717/PEERJ.3787