Sodium in PDB 5u7s: Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii:
4.1.2.13;

Protein crystallography data

The structure of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii, PDB code: 5u7s was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	40.48 / 2.50
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	134.110, 83.120, 99.390, 90.00, 131.98, 90.00
*R / R_free (%)*	19.9 / 26.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii (pdb code 5u7s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii, PDB code: 5u7s:

Sodium binding site 1 out of 1 in 5u7s

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Sodium Binding Sites List in 5u7s

Sodium binding site 1 out of 1 in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na402 b:65.9 occ:1.00	ND1	A:HIS232	2.3	41.0	1.0
	NE2	A:HIS84	2.5	70.7	1.0
	O3	A:CIT401	2.6	59.7	1.0
	O4	A:CIT401	2.8	66.4	1.0
	CE1	A:HIS198	3.0	48.9	1.0
	CE1	A:HIS232	3.1	46.1	1.0
	C5	A:CIT401	3.1	55.7	1.0
	CD2	A:HIS84	3.2	72.0	1.0
	CG	A:HIS232	3.4	45.5	1.0
	CE1	A:HIS84	3.5	68.9	1.0
	OD2	A:ASP83	3.5	52.4	1.0
	NE2	A:HIS198	3.8	49.1	1.0
	ND2	A:ASN275	3.8	55.0	1.0
	CB	A:HIS232	3.9	37.4	1.0
	ND1	A:HIS198	4.0	47.8	1.0
	OD1	A:ASP83	4.1	50.7	1.0
	CG	A:ASP83	4.2	44.9	1.0
	NE2	A:HIS232	4.3	44.5	1.0
	CG	A:HIS84	4.4	68.0	1.0
	CD2	A:HIS232	4.5	50.3	1.0
	ND1	A:HIS84	4.5	70.0	1.0
	C4	A:CIT401	4.6	45.2	1.0
	CD1	A:LEU146	4.7	39.0	1.0
	CG	A:ASN275	4.7	47.7	1.0
	CA	A:HIS232	4.7	37.6	1.0
	CB	A:ASN275	4.8	39.7	1.0

Reference:

T.E.Edwards, J.Abendroth, D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii To Be Published.

Page generated: Tue Oct 8 00:27:04 2024

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