Sodium in PDB 5tr9: Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad

The structure of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad, PDB code: 5tr9 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.06 / 1.65
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	163.010, 163.010, 163.010, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 16.3

The structure of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	28 atoms

The binding sites of Sodium atom in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad (pdb code 5tr9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad, PDB code: 5tr9:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad within 5.0Å range: probe atom residue distance (Å) B Occ B:Na318 b:29.3 occ:1.00 O B:ALA108 2.4 18.1 1.0 O B:HOH588 2.4 31.2 1.0 O B:HOH629 2.4 31.8 1.0 O B:HOH639 2.4 40.0 1.0 O B:HOH600 2.4 32.8 1.0 ND2 B:ASN107 2.4 25.0 1.0 CG B:ASN107 3.3 29.2 1.0 OD1 B:ASN107 3.5 38.2 1.0 C B:ALA108 3.6 15.4 1.0 O B:HOH422 4.2 41.2 1.0 O B:HOH529 4.3 26.8 1.0 O B:HOH696 4.3 35.6 1.0 N B:ALA108 4.3 17.4 1.0 O B:HOH610 4.3 23.4 1.0 N B:THR109 4.5 15.2 1.0 CA B:THR109 4.5 18.8 1.0 CA B:ALA108 4.5 15.6 1.0 CB B:ASN107 4.7 24.1 1.0 NE2 B:GLN49 4.8 17.8 1.0 O B:HOH539 4.8 32.0 1.0 C B:ASN107 4.9 20.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad within 5.0Å range: probe atom residue distance (Å) B Occ B:Na319 b:35.3 occ:1.00 O B:HOH594 2.3 30.0 1.0 O B:GLY199 2.3 25.6 0.6 O B:HOH587 2.4 39.9 1.0 O B:ASN196 2.4 31.4 0.6 OG B:SER201 2.5 24.6 0.2 OG B:SER201 2.5 24.2 0.8 O B:HOH630 2.5 50.3 1.0 C B:ASN196 3.5 27.3 0.6 C B:GLY199 3.6 26.7 0.6 CB B:SER201 3.6 22.4 0.8 N B:SER201 3.7 21.2 1.0 CB B:SER201 3.8 23.2 0.2 N B:ASN196 4.1 33.6 0.6 O B:GLY199 4.1 25.8 0.4 C B:LEU200 4.2 16.6 0.6 CA B:SER201 4.2 20.4 0.8 CA B:ASN196 4.2 30.7 0.6 CA B:SER201 4.3 20.8 0.2 O B:ASN196 4.3 31.9 0.4 CA B:LEU200 4.3 19.8 0.6 N B:GLY199 4.4 27.8 0.6 N B:LEU200 4.4 20.9 0.6 O B:HOH534 4.4 22.6 1.0 CB B:ASN196 4.4 31.1 0.6 O B:SER201 4.5 22.2 1.0 C B:LEU200 4.5 16.8 0.4 N B:PRO197 4.5 28.3 0.6 CA B:GLY199 4.6 24.4 0.6 CA B:LEU200 4.6 18.9 0.4 CA B:PRO197 4.7 34.0 0.6 C B:SER201 4.8 19.1 1.0 C B:PRO197 4.9 35.7 0.6 O B:LEU200 5.0 19.2 0.6

S.J.Mayclin, D.Fox Iii, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad To Be Published.