Sodium in PDB 5tk0: Lysozyme Structure Collected with 3D Printed Polymer Mounts

All present enzymatic activity of Lysozyme Structure Collected with 3D Printed Polymer Mounts:
3.2.1.17;

The structure of Lysozyme Structure Collected with 3D Printed Polymer Mounts, PDB code: 5tk0 was solved by N.L.Kilah, N.Macdonald, G.Bunton, A.Y.Park, M.C.Breadmore, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.47 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.886, 77.886, 37.033, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 29.1

The structure of Lysozyme Structure Collected with 3D Printed Polymer Mounts also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Lysozyme Structure Collected with 3D Printed Polymer Mounts (pdb code 5tk0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Structure Collected with 3D Printed Polymer Mounts, PDB code: 5tk0:

Sodium binding site 1 out of 1 in the Lysozyme Structure Collected with 3D Printed Polymer Mounts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Structure Collected with 3D Printed Polymer Mounts within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:26.3 occ:1.00 O A:HOH373 2.3 17.4 1.0 O A:HOH347 2.4 9.4 1.0 O A:SER60 2.4 17.2 1.0 O A:CYS64 2.6 17.9 1.0 OG A:SER72 2.6 23.9 1.0 O A:ARG73 2.7 27.4 1.0 CB A:SER72 2.9 24.3 1.0 C A:SER60 3.5 14.0 1.0 C A:CYS64 3.6 12.3 1.0 C A:ARG73 3.7 22.6 1.0 CA A:ASN65 3.9 12.9 1.0 C A:SER72 4.0 29.1 1.0 N A:ARG73 4.0 22.4 1.0 CA A:SER72 4.1 21.7 1.0 N A:ASN65 4.2 12.1 1.0 CA A:SER60 4.2 14.1 1.0 CB A:SER60 4.3 8.2 1.0 CA A:ARG73 4.4 19.1 1.0 O A:SER72 4.4 28.1 1.0 N A:ASN74 4.5 21.1 1.0 CB A:THR69 4.5 12.7 1.0 O A:HOH369 4.6 6.3 1.0 N A:ASP66 4.6 13.5 1.0 N A:ARG61 4.6 16.6 1.0 C A:ARG61 4.7 20.4 1.0 CB A:ASN65 4.7 14.4 1.0 N A:CYS64 4.7 8.8 1.0 CA A:ASN74 4.7 13.3 1.0 O A:HOH357 4.8 27.6 1.0 OD1 A:ASN65 4.8 11.9 1.0 C A:ASN65 4.8 11.2 1.0 CA A:CYS64 4.8 14.7 1.0 O A:ARG61 4.8 23.3 1.0 O A:THR69 4.8 16.8 1.0 N A:TRP62 4.9 17.8 1.0 CA A:ARG61 4.9 18.6 1.0 CB A:ASN74 4.9 12.3 1.0

N.P.Macdonald, G.L.Bunton, A.Y.Park, M.C.Breadmore, N.L.Kilah. 3D Printed Micrometer-Scale Polymer Mounts For Single Crystal Analysis. Anal. Chem. V. 89 4405 2017.
ISSN: ESSN 1520-6882
PubMed: 28319372
DOI: 10.1021/ACS.ANALCHEM.7B00443