Sodium in PDB 5qu8: Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV

The structure of Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV, PDB code: 5qu8 was solved by M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.60 / 0.93
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	40.100, 55.170, 27.000, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 18.2

The binding sites of Sodium atom in the Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV (pdb code 5qu8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV, PDB code: 5qu8:

Sodium binding site 1 out of 1 in the Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Symmetric Swapped Human Nck SH3.1 Domain, 0.93A, Orthorhombic Form IV within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:25.1 occ:1.00 O A:VAL57 2.3 14.8 1.0 O A:HOH255 2.4 49.3 1.0 O A:SER54 2.4 12.6 1.0 O A:HOH257 2.4 36.4 1.0 C A:SER54 3.4 9.4 1.0 CH2 A:TRP40 3.5 20.9 1.0 C A:VAL57 3.5 12.2 1.0 CZ3 A:TRP40 3.8 18.8 1.0 CZ2 A:TRP40 4.1 21.6 1.0 CA A:ASN55 4.2 11.3 1.0 N A:ASN55 4.2 9.6 1.0 CA A:GLU58 4.3 15.7 1.0 N A:VAL57 4.3 9.1 1.0 O A:HOH208 4.3 34.9 1.0 N A:GLU58 4.4 13.6 1.0 C A:ASN55 4.4 8.9 1.0 CA A:SER54 4.4 10.5 1.0 O A:HOH214 4.5 44.7 1.0 CA A:VAL57 4.5 10.6 1.0 O A:HOH241 4.5 34.5 1.0 CG2 A:VAL57 4.6 19.4 1.0 CE3 A:TRP40 4.6 16.3 1.0 CB A:SER54 4.6 14.5 1.0 O A:ASN55 4.7 12.3 1.0 CB A:GLU58 4.7 19.4 1.0 CE2 A:TRP40 4.8 16.2 1.0 N A:TYR56 5.0 7.6 1.0

K.Richter, A.Topp, D.Schlatter, M.G.Rudolph. Domain Swap in the First SH3 Domain of Human NCK1 To Be Published.