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Sodium in PDB 5qtj: T. Brucei Fpps in Complex with Cid 47256035

Protein crystallography data

The structure of T. Brucei Fpps in Complex with Cid 47256035, PDB code: 5qtj was solved by L.Muenzker, J.K.Petrick, C.Schleberger, I.Cornaciu, J.A.Marquez, W.Jahnke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.03 / 2.10
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 60.539, 60.539, 342.171, 90.00, 90.00, 120.00
R / Rfree (%) 24 / 27.8

Other elements in 5qtj:

The structure of T. Brucei Fpps in Complex with Cid 47256035 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the T. Brucei Fpps in Complex with Cid 47256035 (pdb code 5qtj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the T. Brucei Fpps in Complex with Cid 47256035, PDB code: 5qtj:

Sodium binding site 1 out of 1 in 5qtj

Go back to Sodium Binding Sites List in 5qtj
Sodium binding site 1 out of 1 in the T. Brucei Fpps in Complex with Cid 47256035


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of T. Brucei Fpps in Complex with Cid 47256035 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:55.7
occ:1.00
OE1 A:GLU93 2.7 40.6 1.0
N A:ARG50 2.8 40.6 1.0
NH1 A:ARG50 2.8 40.5 1.0
CG A:ARG50 3.1 34.5 1.0
CB A:ARG50 3.1 33.2 1.0
O A:HOH574 3.3 55.0 1.0
N A:ASN49 3.4 43.3 1.0
OE2 A:GLU93 3.4 40.5 1.0
CD A:GLU93 3.4 38.8 1.0
CD A:ARG50 3.4 28.5 1.0
CA A:ARG50 3.5 40.5 1.0
C A:TYR48 3.8 43.2 1.0
O A:HOH550 3.8 41.2 1.0
C A:ASN49 3.8 48.6 1.0
CZ A:ARG50 3.9 38.7 1.0
CA A:TYR48 4.0 41.6 1.0
CA A:ASN49 4.0 48.1 1.0
NE A:ARG50 4.1 33.5 1.0
N A:GLY51 4.2 35.9 1.0
CB A:ASN49 4.3 55.9 1.0
N A:TYR48 4.3 45.9 1.0
C A:ARG50 4.4 39.4 1.0
O A:TYR48 4.6 44.5 1.0
CG A:GLU93 4.9 33.8 1.0
O A:ASN49 5.0 48.7 1.0

Reference:

L.Muenzker, L.Muenzker, J.K.Petrick, C.Schleberger, I.Cornaciu, J.A.Marquez, W.Jahnke. N/A N/A.
Page generated: Mon Oct 7 23:51:02 2024

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