Sodium in PDB 5nyq: Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32

The structure of Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32, PDB code: 5nyq was solved by M.-T.Vielberg, M.Groll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	175.548, 175.548, 39.742, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 21.4

The binding sites of Sodium atom in the Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32 (pdb code 5nyq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32, PDB code: 5nyq:

Sodium binding site 1 out of 1 in the Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anbu (Gly-1) Mutant From Hyphomicrobium Sp. Strain MC1 - Sg:R32 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:61.2 occ:0.50 O A:HOH456 2.2 0.7 1.0 O A:HOH426 2.3 61.6 1.0 OD2 A:ASP167 3.3 40.4 1.0 OD1 A:ASP167 3.5 38.0 1.0 CG A:ASP167 3.8 38.2 1.0 CG A:ARG165 4.2 39.6 1.0 O A:HOH459 4.2 64.8 1.0 CB A:ARG165 4.4 36.2 1.0 CD A:ARG165 4.5 43.0 1.0 NE A:ARG165 4.8 45.3 1.0

M.T.Vielberg, V.C.Bauer, M.Groll. On the Trails of the Proteasome Fold: Structural and Functional Analysis of the Ancestral Beta-Subunit Protein Anbu. J. Mol. Biol. V. 430 628 2018.
ISSN: ESSN 1089-8638
PubMed: 29355501
DOI: 10.1016/J.JMB.2018.01.004