Sodium in PDB 5nxf: Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom.

The structure of Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom., PDB code: 5nxf was solved by M.Namura, M.J.Van Raaij, S.Kanamaru, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.12 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	92.107, 75.943, 149.128, 90.00, 90.21, 90.00
R / Rfree (%)	17.1 / 20.8

The binding sites of Sodium atom in the Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom. (pdb code 5nxf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom., PDB code: 5nxf:

Sodium binding site 1 out of 1 in the Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fibre Protein GP34, Residues 795 to 1289, at 1.9 Angstrom. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1307 b:41.6 occ:1.00 OD1 C:ASP892 2.3 46.2 1.0 OD1 A:ASP889 2.4 39.6 1.0 OD1 C:ASN886 2.6 43.8 1.0 O C:ASN886 2.8 39.8 1.0 OD2 A:ASP889 2.8 39.3 1.0 CG A:ASP889 3.0 41.2 1.0 CG C:ASN886 3.3 43.8 1.0 CG C:ASP892 3.5 44.1 1.0 C C:ASN886 3.7 42.2 1.0 ND2 C:ASN886 3.9 46.0 1.0 CA C:ASN886 4.0 41.4 1.0 OD2 C:ASP892 4.1 43.3 1.0 CB C:ASN886 4.2 42.7 1.0 CB A:ASP889 4.4 40.2 1.0 CB C:ASP892 4.5 43.1 1.0 NZ B:LYS881 4.7 48.1 1.0 CA C:ASP892 4.7 41.4 1.0 N C:SER893 4.8 42.6 1.0 CD2 C:LEU887 4.9 44.9 1.0 OG C:SER893 4.9 36.3 1.0 N C:LEU887 5.0 43.1 1.0

M.Granell, M.Namura, S.Alvira, S.Kanamaru, M.J.Van Raaij. Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein GP34. Viruses V. 9 2017.
ISSN: ISSN 1999-4915
PubMed: 28665339
DOI: 10.3390/V9070168