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Sodium in PDB 5nt5: The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg)

Protein crystallography data

The structure of The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg), PDB code: 5nt5 was solved by H.I.Sbirkova, B.L.Shivachev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.98 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.044, 41.534, 64.868, 90.00, 90.00, 90.00
R / Rfree (%) 24.5 / 31.2

Other elements in 5nt5:

The structure of The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg) also contains other interesting chemical elements:

Arsenic (As) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg) (pdb code 5nt5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg), PDB code: 5nt5:

Sodium binding site 1 out of 1 in 5nt5

Go back to Sodium Binding Sites List in 5nt5
Sodium binding site 1 out of 1 in the The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na102

b:46.0
occ:1.00
OP2 A:DG2 2.2 40.1 1.0
P A:DG2 3.5 43.0 1.0
O5' A:DG2 3.7 39.2 1.0
C8 A:DG2 3.8 28.4 1.0
C2' A:DG2 4.0 33.2 1.0
C2' A:DC1 4.1 33.4 1.0
C7 A:DT3 4.2 34.0 1.0
O2 A:CAC101 4.2 0.7 1.0
O3' A:DC1 4.3 41.7 1.0
C3' A:DC1 4.5 35.9 1.0
N7 A:DG2 4.6 27.7 1.0
OP1 A:DG2 4.7 47.7 1.0
N9 A:DG2 4.7 30.3 1.0
C3' A:DG2 4.8 35.9 1.0
C5' A:DG2 4.9 37.1 1.0
C1' A:DG2 4.9 31.4 1.0

Reference:

H.I.Sbirkova, B.L.Shivachev. The Effect of Berenil and Cacodylateon the Crystal Structure of D(Cgtgaattcacg) To Be Published.
Page generated: Mon Oct 7 23:03:18 2024

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