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Sodium in PDB 5nsw: Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.

Protein crystallography data

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw was solved by G.Phan, T.Prange, Y.V.Enguene Ntsogo, C.Garnier, A.Ducruix, I.Broutin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 2.50
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 256.412, 256.412, 81.395, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 23.9

Other elements in 5nsw:

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Xenon (Xe) 17 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. (pdb code 5nsw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw:

Sodium binding site 1 out of 1 in 5nsw

Go back to Sodium Binding Sites List in 5nsw
Sodium binding site 1 out of 1 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na510

b:45.9
occ:1.00
O B:HOH704 2.4 38.3 1.0
OD1 B:ASP73 2.5 35.0 1.0
OG A:SER332 2.5 33.6 1.0
O B:ASP73 2.6 37.4 1.0
OD1 B:ASP77 3.0 61.0 1.0
CB A:SER332 3.6 31.7 1.0
C B:ASP73 3.7 37.5 1.0
CB B:ASN76 3.7 38.4 1.0
CG B:ASP73 3.7 36.9 1.0
CG B:ASP77 3.9 52.1 1.0
OD1 A:ASP329 4.2 40.2 1.0
CA B:ASP73 4.3 35.4 1.0
N B:ASP77 4.3 37.9 1.0
OD2 B:ASP77 4.4 57.5 1.0
C B:ASN76 4.4 43.7 1.0
CA B:ASN76 4.5 36.2 1.0
OD2 B:ASP73 4.6 34.6 1.0
CB B:ASP73 4.6 30.4 1.0
CA A:SER332 4.7 33.9 1.0
N B:VAL74 4.7 34.6 1.0
N B:ASN76 4.7 33.0 1.0
CG B:ASN76 4.7 42.6 1.0
OD1 B:ASN76 4.8 44.2 1.0
CA B:ASP77 4.9 39.6 1.0
CB B:ASP77 4.9 40.8 1.0
NH2 A:ARG336 5.0 52.7 1.0
O B:ASN76 5.0 46.0 1.0

Reference:

Y.V.Ntsogo Enguene, G.Phan, C.Garnier, A.Ducruix, T.Prange, I.Broutin. Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. Plos One V. 12 84045 2017.
ISSN: ESSN 1932-6203
PubMed: 28886086
DOI: 10.1371/JOURNAL.PONE.0184045
Page generated: Thu Oct 29 05:35:11 2020

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