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Sodium in PDB 5nls: Auxiliary Activity 9

Protein crystallography data

The structure of Auxiliary Activity 9, PDB code: 5nls was solved by K.E.H.Frandsen, J.-C.N.Poulsen, T.Tandrup, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.75
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 126.300, 126.300, 126.300, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 21.4

Other elements in 5nls:

The structure of Auxiliary Activity 9 also contains other interesting chemical elements:

Copper (Cu) 1 atom
Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Auxiliary Activity 9 (pdb code 5nls). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Auxiliary Activity 9, PDB code: 5nls:

Sodium binding site 1 out of 1 in 5nls

Go back to Sodium Binding Sites List in 5nls
Sodium binding site 1 out of 1 in the Auxiliary Activity 9


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Auxiliary Activity 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na311

b:52.5
occ:1.00
O A:HOH596 2.3 32.4 0.6
O A:HOH596 2.4 32.4 0.4
O A:HOH416 4.1 40.9 1.0
O A:GLN14 4.6 26.7 1.0

Reference:

T.J.Simmons, K.E.H.Frandsen, L.Ciano, T.Tryfona, N.Lenfant, J.C.Poulsen, L.F.L.Wilson, T.Tandrup, M.Tovborg, K.Schnorr, K.S.Johansen, B.Henrissat, P.H.Walton, L.Lo Leggio, P.Dupree. Structural and Electronic Determinants of Lytic Polysaccharide Monooxygenase Reactivity on Polysaccharide Substrates. Nat Commun V. 8 1064 2017.
ISSN: ESSN 2041-1723
PubMed: 29057953
DOI: 10.1038/S41467-017-01247-3
Page generated: Tue Dec 15 11:21:22 2020

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