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Sodium in PDB 5nbj: Dls Tetragonal - Rehewl

Enzymatic activity of Dls Tetragonal - Rehewl

All present enzymatic activity of Dls Tetragonal - Rehewl:
3.2.1.17;

Protein crystallography data

The structure of Dls Tetragonal - Rehewl, PDB code: 5nbj was solved by A.Brink, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.95 / 1.27
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.890, 79.890, 37.000, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.7

Other elements in 5nbj:

The structure of Dls Tetragonal - Rehewl also contains other interesting chemical elements:

Rhenium (Re) 10 atoms
Chlorine (Cl) 9 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Dls Tetragonal - Rehewl (pdb code 5nbj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Dls Tetragonal - Rehewl, PDB code: 5nbj:

Sodium binding site 1 out of 1 in 5nbj

Go back to Sodium Binding Sites List in 5nbj
Sodium binding site 1 out of 1 in the Dls Tetragonal - Rehewl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Dls Tetragonal - Rehewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na211

b:15.4
occ:1.00
O A:SER60 2.3 15.3 1.0
O A:HOH343 2.4 17.6 1.0
O A:ARG73 2.4 18.1 1.0
O A:CYS64 2.5 14.8 1.0
O A:HOH333 2.5 13.9 1.0
OG A:SER72 2.5 17.9 1.0
CB A:SER72 3.2 17.6 1.0
C A:ARG73 3.5 17.2 1.0
C A:SER60 3.5 14.3 1.0
C A:CYS64 3.5 13.9 1.0
CA A:ASN65 3.9 14.7 1.0
N A:ARG73 3.9 19.2 1.0
C A:SER72 4.1 18.4 1.0
CA A:SER60 4.1 13.2 1.0
N A:ASN65 4.1 13.3 1.0
CB A:SER60 4.2 13.8 1.0
CA A:ARG73 4.3 19.6 1.0
CA A:SER72 4.3 17.7 1.0
N A:ASN74 4.4 17.6 1.0
N A:CYS64 4.5 13.8 1.0
O A:ARG61 4.5 18.5 1.0
C A:ARG61 4.5 17.5 1.0
N A:ARG61 4.6 15.0 1.0
CA A:ASN74 4.6 17.0 1.0
N A:ASP66 4.6 13.0 1.0
O A:SER72 4.6 21.0 1.0
CA A:CYS64 4.6 13.8 1.0
OD1 A:ASN65 4.7 17.1 1.0
CL A:CL206 4.7 17.1 1.0
CB A:THR69 4.7 14.5 1.0
CB A:ASN74 4.7 17.5 1.0
CA A:ARG61 4.8 17.4 1.0
CB A:ASN65 4.8 16.0 1.0
C A:ASN65 4.8 13.2 1.0
N A:TRP62 4.9 16.7 1.0

Reference:

A.Brink, J.R.Helliwell. New Leads For Fragment-Based Design of Rhenium/Technetium Radiopharmaceutical Agents. Iucrj V. 4 283 2017.
ISSN: ESSN 2052-2525
PubMed: 28512575
DOI: 10.1107/S2052252517003475
Page generated: Tue Dec 15 11:20:31 2020

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