Sodium in PDB 5n9g: Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1-

The structure of Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1-, PDB code: 5n9g was solved by J.Gouge, A.Vannini, N.Guthertz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.04 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	81.190, 124.080, 88.610, 90.00, 99.51, 90.00
R / Rfree (%)	19.4 / 23.4

The binding sites of Sodium atom in the Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1- (pdb code 5n9g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1-, PDB code: 5n9g:

Sodium binding site 1 out of 1 in the Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1-


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tfiiib -Tbp/BRF2/Dna and Sant Domain of BDP1- within 5.0Å range: probe atom residue distance (Å) B Occ H:Na401 b:83.8 occ:1.00 O H:ARG332 2.4 83.3 1.0 O H:PHE329 2.6 88.6 1.0 O H:PRO330 2.9 96.5 1.0 O H:HOH502 2.9 65.4 1.0 O H:GLY326 3.1 84.6 1.0 C H:ARG332 3.1 83.3 1.0 C H:PRO330 3.2 95.2 1.0 N H:ARG332 3.3 81.7 1.0 O H:HOH506 3.4 67.3 1.0 C H:PHE329 3.7 89.3 1.0 CA H:PRO330 3.7 92.7 1.0 CA H:ARG332 3.8 78.9 1.0 N H:HIS331 3.9 89.8 1.0 N H:ALA333 4.0 79.8 1.0 C H:HIS331 4.2 87.8 1.0 N H:PRO330 4.2 89.7 1.0 C H:GLY326 4.3 84.9 1.0 CA H:HIS331 4.3 89.3 1.0 CA H:ALA333 4.4 79.3 1.0 CB H:ARG332 4.8 74.8 1.0 CA H:PHE329 4.9 82.5 1.0

J.Gouge, N.Guthertz, K.Kramm, O.Dergai, G.Abascal-Palacios, K.Satia, P.Cousin, N.Hernandez, D.Grohmann, A.Vannini. Molecular Mechanisms of BDP1 in Tfiiib Assembly and Rna Polymerase III Transcription Initiation. Nat Commun V. 8 130 2017.
ISSN: ESSN 2041-1723
PubMed: 28743884
DOI: 10.1038/S41467-017-00126-1