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Sodium in PDB 5n5f: Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin

Protein crystallography data

The structure of Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin, PDB code: 5n5f was solved by J.Marles-Wright, D.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.82 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.629, 92.652, 119.291, 90.00, 106.94, 90.00
R / Rfree (%) 19.9 / 24.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin (pdb code 5n5f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin, PDB code: 5n5f:

Sodium binding site 1 out of 1 in 5n5f

Go back to Sodium Binding Sites List in 5n5f
Sodium binding site 1 out of 1 in the Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Haliangium Ochraceum Encapsulated Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na101

b:34.7
occ:1.00
OG1 E:THR85 2.3 34.2 1.0
O E:HOH224 2.4 38.3 1.0
O E:HOH215 2.4 32.1 1.0
HA E:THR85 3.4 36.2 1.0
CB E:THR85 3.5 31.4 1.0
HG23 E:THR85 3.5 35.9 1.0
CA E:THR85 3.9 30.1 1.0
CG2 E:THR85 4.0 29.9 1.0
O E:HOH227 4.0 42.3 1.0
O E:HOH211 4.1 36.2 1.0
HG21 E:THR85 4.2 35.9 1.0
N E:THR85 4.2 31.3 1.0
HB E:THR85 4.3 37.7 1.0
O E:ALA81 4.3 29.1 1.0
H E:THR85 4.3 37.6 1.0
HB2 E:ARG84 4.5 34.4 1.0
HB3 E:ARG84 4.7 34.4 1.0
O E:HOH216 4.7 33.6 1.0
C E:ARG84 4.8 34.0 1.0
HG22 E:THR85 4.8 35.9 1.0

Reference:

D.He, C.Piergentili, J.Ross, E.Tarrant, L.R.Tuck, C.L.Mackay, Z.Mciver, K.J.Waldron, D.J.Clarke, J.Marles-Wright. Conservation of the Structural and Functional Architecture of Encapsulated Ferritins in Bacteria and Archaea. Biochem.J. V. 476 975 2019.
ISSN: ESSN 1470-8728
PubMed: 30837306
DOI: 10.1042/BCJ20180922
Page generated: Tue Dec 15 11:19:57 2020

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