Sodium in PDB 5n04: X-Ray Crystal Structure of An Lpmo

The structure of X-Ray Crystal Structure of An Lpmo, PDB code: 5n04 was solved by K.E.H.Frandsen, J.-C.N.Poulsen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.62 / 1.76
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	125.330, 125.330, 125.330, 90.00, 90.00, 90.00
R / Rfree (%)	15.8 / 18.7

The structure of X-Ray Crystal Structure of An Lpmo also contains other interesting chemical elements:

Copper	(Cu)	1 atom
Chlorine	(Cl)	12 atoms

The binding sites of Sodium atom in the X-Ray Crystal Structure of An Lpmo (pdb code 5n04). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of An Lpmo, PDB code: 5n04:

Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of An Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Na314 b:23.9 occ:1.00 O A:ILE158 2.3 13.5 1.0 O A:HOH594 2.3 28.2 1.0 O A:HOH673 2.4 27.1 1.0 OE2 A:GLU148 2.4 17.6 1.0 O A:HOH696 2.5 24.7 1.0 O A:HOH571 2.6 32.9 1.0 CD A:GLU148 3.4 20.6 1.0 C A:ILE158 3.5 12.7 1.0 OE1 A:GLU148 3.6 27.9 1.0 O A:HOH520 3.9 13.7 1.0 CD1 A:ILE158 4.2 16.3 0.5 O A:HOH650 4.2 22.9 1.0 NZ A:LYS32 4.3 16.1 1.0 N A:ARG159 4.4 11.3 1.0 CA A:ARG159 4.5 11.4 1.0 O A:HOH690 4.6 22.8 0.5 CA A:ILE158 4.6 12.7 0.5 CA A:ILE158 4.6 13.5 0.5 CB A:ILE158 4.7 13.1 0.5 CB A:ILE158 4.7 14.8 0.5 O A:HOH740 4.8 20.5 0.5 O A:HOH690 4.8 13.7 0.5 CG A:GLU148 4.8 17.1 1.0 NE2 A:GLN162 4.9 17.7 1.0 CG A:ARG159 4.9 12.8 1.0

K.E.H.Frandsen, J.N.Poulsen, T.Tandrup, L.Lo Leggio. Unliganded and Substrate Bound Structures of the Cellooligosaccharide Active Lytic Polysaccharide Monooxygenase LSAA9A at Low pH. Carbohydr. Res. V. 448 187 2017.
ISSN: ISSN 1873-426X
PubMed: 28364950
DOI: 10.1016/J.CARRES.2017.03.010