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Sodium in PDB 5my7: Adhesin Complex Protein From Neisseria Meningitidis

Protein crystallography data

The structure of Adhesin Complex Protein From Neisseria Meningitidis, PDB code: 5my7 was solved by J.P.Derrick, A.Awanye, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.64 / 1.40
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.470, 58.470, 51.561, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 20

Sodium Binding Sites:

The binding sites of Sodium atom in the Adhesin Complex Protein From Neisseria Meningitidis (pdb code 5my7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Adhesin Complex Protein From Neisseria Meningitidis, PDB code: 5my7:

Sodium binding site 1 out of 1 in 5my7

Go back to Sodium Binding Sites List in 5my7
Sodium binding site 1 out of 1 in the Adhesin Complex Protein From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Adhesin Complex Protein From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:41.2
occ:1.00
N A:ASP113 3.4 20.6 1.0
CG A:ASP113 3.5 24.6 1.0
CD A:PRO112 3.6 21.1 1.0
OD1 A:ASP113 3.7 24.9 1.0
CB A:ASP113 3.7 22.6 1.0
CB A:ALA111 3.8 19.9 1.0
N A:PRO112 3.8 19.1 1.0
OD2 A:ASP113 3.9 32.5 1.0
CB A:PRO112 4.0 22.7 1.0
CG A:PRO112 4.1 23.4 1.0
CA A:ASP113 4.2 21.1 1.0
C A:PRO112 4.2 20.4 1.0
CA A:PRO112 4.2 21.2 1.0
C A:ALA111 4.4 18.2 1.0
CA A:ALA111 4.7 17.0 1.0

Reference:

M.V.Humbert, A.M.Awanye, L.Y.Lian, J.P.Derrick, M.Christodoulides. Structure of the Neisseria Adhesin Complex Protein (Acp) and Its Role As A Novel Lysozyme Inhibitor. Plos Pathog. V. 13 06448 2017.
ISSN: ESSN 1553-7374
PubMed: 28662181
DOI: 10.1371/JOURNAL.PPAT.1006448
Page generated: Tue Dec 15 11:19:36 2020

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