Sodium in PDB 5mxb: Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin

The structure of Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin, PDB code: 5mxb was solved by J.Sliwiak, M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.23 / 1.51
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	74.469, 74.469, 67.110, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 21.1

The binding sites of Sodium atom in the Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin (pdb code 5mxb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin, PDB code: 5mxb:

Sodium binding site 1 out of 1 in the Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Yellow Lupin Llpr-10.2B Protein in Complex with Melatonin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na221 b:21.0 occ:1.00 O A:PRO31 2.3 26.9 1.0 O A:ILE37 2.3 19.7 1.0 O A:VAL34 2.4 19.1 1.0 O A:HOH330 2.4 24.5 1.0 O A:HOH305 2.8 38.9 1.0 C A:PRO31 3.4 24.7 1.0 C A:VAL34 3.4 20.3 1.0 C A:ILE37 3.4 19.5 1.0 O A:GLU35 3.8 26.1 0.5 CA A:GLU35 3.8 22.0 0.5 C A:GLU35 3.8 22.5 0.5 CA A:PRO31 3.8 22.4 1.0 CA A:GLU35 3.9 23.0 0.5 N A:ILE37 4.0 17.3 1.0 N A:GLU35 4.0 20.4 0.5 C A:GLU35 4.1 21.2 0.5 N A:GLU35 4.1 20.6 0.5 CA A:ILE37 4.2 18.0 1.0 N A:GLN38 4.4 20.2 1.0 N A:VAL34 4.5 19.7 1.0 N A:LYS32 4.5 25.2 1.0 CA A:VAL34 4.5 18.8 1.0 O A:GLU35 4.5 18.9 0.5 O A:HOH393 4.5 38.6 1.0 N A:THR36 4.5 19.4 1.0 CB A:PRO31 4.6 23.8 1.0 CA A:GLN38 4.6 22.7 1.0 O A:ILE30 4.7 20.6 1.0 C A:LYS32 4.7 28.2 1.0 OE2 A:GLU35 4.7 28.4 0.5 CB A:ILE37 4.7 18.0 1.0 O A:LYS32 4.8 26.9 1.0 CA A:LYS32 4.8 27.2 1.0 C A:THR36 4.9 18.4 1.0

J.Sliwiak, M.Sikorski, M.Jaskolski. Pr-10 Proteins As Potential Mediators of Melatonin-Cytokinin Cross-Talk in Plants: Crystallographic Studies of Llpr-10.2B Isoform From Yellow Lupine. Febs J. V. 285 1907 2018.
ISSN: ISSN 1742-4658
PubMed: 29630775
DOI: 10.1111/FEBS.14455