Sodium in PDB 5mlh: Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+

Enzymatic activity of Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+

All present enzymatic activity of Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+:
1.1.1.145;

Protein crystallography data

The structure of Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+, PDB code: 5mlh was solved by R.Fellows, C.M.Russo, S.G.Lee, J.M.Jez, J.D.Chisholm, C.Zubieta, M.Nanao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	39.86 / 1.86
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	79.520, 79.520, 138.200, 90.00, 90.00, 90.00
*R / R_free (%)*	16 / 20.4

Other elements in 5mlh:

The structure of Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+ also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+ (pdb code 5mlh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+, PDB code: 5mlh:

Sodium binding site 1 out of 1 in 5mlh

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Sodium Binding Sites List in 5mlh

Sodium binding site 1 out of 1 in the Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Plantago Major Multifunctional Oxidoreductase in Complex with 8- Oxogeranial and Nadp+ within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na401 b:46.8 occ:1.00	OD2	A:ASP252	2.5	33.0	1.0
	O	A:HOH669	3.0	49.4	1.0
	NE	A:ARG369	3.1	35.5	1.0
	O	A:HOH512	3.2	47.4	1.0
	CG	A:ASP252	3.2	35.9	1.0
	OD1	A:ASP252	3.3	35.2	1.0
	CD	A:ARG369	3.6	28.2	1.0
	NE1	A:TRP378	4.1	31.4	1.0
	CZ	A:ARG369	4.1	30.8	1.0
	CG	A:ARG369	4.1	28.9	1.0
	NH2	A:ARG369	4.3	32.3	1.0
	CZ2	A:TRP378	4.3	30.3	1.0
	CE2	A:TRP378	4.5	32.0	1.0
	CB	A:ASP254	4.5	31.5	1.0
	OD2	A:ASP254	4.5	39.1	1.0
	OG	A:SER374	4.5	32.1	1.0
	O	A:HOH620	4.5	41.2	1.0
	CB	A:ASP252	4.6	24.7	1.0
	CB	A:SER374	4.6	28.9	1.0
	CA	A:SER374	4.7	28.9	1.0
	OG	A:SER377	4.8	46.7	1.0
	CG	A:ASP254	4.9	35.4	1.0

Reference:

R.Fellows, C.M.Russo, C.S.Silva, S.G.Lee, J.M.Jez, J.D.Chisholm, C.Zubieta, M.H.Nanao. A Multisubstrate Reductase From Plantago Major: Structure-Function in the Short Chain Reductase Superfamily. Sci Rep V. 8 14796 2018.
ISSN: ESSN 2045-2322
PubMed: 30287897
DOI: 10.1038/S41598-018-32967-1

Page generated: Mon Oct 7 22:42:33 2024

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