Atomistry » Sodium » PDB 5mft-5mse » 5mk6
Atomistry »
  Sodium »
    PDB 5mft-5mse »
      5mk6 »

Sodium in PDB 5mk6: Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1)

Enzymatic activity of Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1)

All present enzymatic activity of Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1):
3.4.24.69;

Protein crystallography data

The structure of Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1), PDB code: 5mk6 was solved by J.R.Davies, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.05 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.770, 107.320, 107.600, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 22.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1) (pdb code 5mk6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1), PDB code: 5mk6:

Sodium binding site 1 out of 1 in 5mk6

Go back to Sodium Binding Sites List in 5mk6
Sodium binding site 1 out of 1 in the Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Receptor-Binding Domain of Botulinum Neurotoxin A1 (Crystal Form 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1301

b:20.1
occ:1.00
 O A:HOH1764 3.1 42.4 1.0
ND2 A:ASN1183 3.2 13.0 1.0
NH2 A:ARG1192 3.3 19.1 1.0
CD1 A:ILE1211 3.8 14.8 1.0
CE A:LYS1163 3.9 17.8 1.0
O A:HOH1735 4.1 48.0 1.0
CG A:ASN1183 4.1 13.1 1.0
OD1 A:ASN1183 4.1 15.1 1.0
CG A:LYS1163 4.4 14.6 1.0
CD A:LYS1163 4.5 14.9 1.0
NZ A:LYS1163 4.6 20.6 1.0
CZ A:ARG1192 4.6 16.5 1.0
OE1 A:GLU1190 4.8 23.8 1.0
CG2 A:ILE1211 4.9 15.0 1.0

Reference:

J.R.Davies, G.S.Hackett, S.M.Liu, K.R.Acharya. High Resolution Crystal Structures of the Receptor-Binding Domain Ofclostridium Botulinumneurotoxin Serotypes A and Fa. Peerj V. 6 E4552 2018.
ISSN: ESSN 2167-8359
PubMed: 29576992
DOI: 10.7717/PEERJ.4552
Page generated: Mon Oct 7 22:42:16 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy