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Sodium in PDB 5mid: The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min.

Enzymatic activity of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min.

All present enzymatic activity of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min.:
1.10.3.2;

Protein crystallography data

The structure of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min., PDB code: 5mid was solved by K.M.Polyakov, S.Gavryushov, T.V.Fedorova, O.A.Glazunova, A.N.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.50 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.370, 84.390, 112.480, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 15

Other elements in 5mid:

The structure of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min. also contains other interesting chemical elements:

Copper (Cu) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min. (pdb code 5mid). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min., PDB code: 5mid:

Sodium binding site 1 out of 1 in 5mid

Go back to Sodium Binding Sites List in 5mid
Sodium binding site 1 out of 1 in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 14-Th Structure of the Series with Total Exposition Time 393 Min. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na612

b:16.5
occ:0.50
O A:HOH1181 2.0 16.6 0.5
O A:HOH957 2.3 18.8 1.0
O A:VAL317 2.4 9.5 1.0
O A:HOH1179 2.6 15.0 0.5
O A:HOH1210 2.7 35.2 1.0
O A:HOH1219 2.7 17.8 0.5
H A:VAL317 3.0 8.9 1.0
C A:VAL317 3.6 8.7 1.0
O A:HOH1194 3.9 15.6 0.5
N A:VAL317 3.9 8.9 1.0
HB A:VAL317 4.0 9.0 1.0
HA A:PRO318 4.1 8.5 1.0
CA A:VAL317 4.2 8.6 1.0
O A:GLY319 4.3 10.3 1.0
HA3 A:GLY316 4.5 10.2 1.0
N A:PRO318 4.5 8.3 1.0
CA A:PRO318 4.6 8.6 1.0
CB A:VAL317 4.7 9.0 1.0
O A:TYR419 4.8 11.1 1.0
C A:PRO318 4.8 8.4 1.0
O A:HOH903 4.8 19.6 1.0
O A:HOH972 4.9 18.1 1.0
O A:HOH1029 4.9 26.4 1.0
C A:GLY316 5.0 9.1 1.0

Reference:

K.M.Polyakov, S.Gavryushov, S.Ivanova, T.V.Fedorova, O.A.Glazunova, A.N.Popov, O.V.Koroleva. Structural Study of the X-Ray-Induced Enzymatic Reduction of Molecular Oxygen to Water By Steccherinum Murashkinskyi Laccase: Insights Into the Reaction Mechanism. Acta Crystallogr D Struct V. 73 388 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28471364
DOI: 10.1107/S2059798317003667
Page generated: Tue Dec 15 11:18:31 2020

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