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Sodium in PDB 5mib: The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min.

Enzymatic activity of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min.

All present enzymatic activity of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min.:
1.10.3.2;

Protein crystallography data

The structure of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min., PDB code: 5mib was solved by K.M.Polyakov, S.Gavryushov, T.V.Fedorova, O.A.Glazunova, A.N.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.54 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.440, 84.450, 112.510, 90.00, 90.00, 90.00
R / Rfree (%) 13 / 14.8

Other elements in 5mib:

The structure of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min. also contains other interesting chemical elements:

Copper (Cu) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min. (pdb code 5mib). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min., PDB code: 5mib:

Sodium binding site 1 out of 1 in 5mib

Go back to Sodium Binding Sites List in 5mib
Sodium binding site 1 out of 1 in the The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi.the 12-Th Structure of the Series with Total Exposition Time 333 Min. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na612

b:16.9
occ:0.50
O A:HOH1175 2.0 16.3 0.5
O A:HOH939 2.3 18.7 1.0
O A:VAL317 2.4 9.8 1.0
O A:HOH1177 2.6 14.9 0.5
O A:HOH1196 2.6 37.1 1.0
O A:HOH1215 2.6 18.0 0.5
H A:VAL317 3.0 8.7 1.0
C A:VAL317 3.6 8.2 1.0
O A:HOH1184 3.8 14.9 0.5
N A:VAL317 3.9 8.7 1.0
HB A:VAL317 4.0 9.0 1.0
HA A:PRO318 4.1 8.5 1.0
CA A:VAL317 4.3 8.4 1.0
O A:GLY319 4.3 10.5 1.0
HA3 A:GLY316 4.5 10.2 1.0
N A:PRO318 4.5 7.7 1.0
CA A:PRO318 4.6 8.7 1.0
CB A:VAL317 4.7 9.2 1.0
O A:HOH945 4.8 26.4 1.0
O A:TYR419 4.8 11.4 1.0
C A:PRO318 4.8 8.7 1.0
O A:HOH910 4.9 19.4 1.0
O A:HOH982 4.9 18.3 1.0

Reference:

K.M.Polyakov, S.Gavryushov, S.Ivanova, T.V.Fedorova, O.A.Glazunova, A.N.Popov, O.V.Koroleva. Structural Study of the X-Ray-Induced Enzymatic Reduction of Molecular Oxygen to Water By Steccherinum Murashkinskyi Laccase: Insights Into the Reaction Mechanism. Acta Crystallogr D Struct V. 73 388 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28471364
DOI: 10.1107/S2059798317003667
Page generated: Tue Dec 15 11:18:30 2020

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