Sodium in PDB 5mej: Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time.

Enzymatic activity of Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time.

All present enzymatic activity of Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time.:
1.10.3.2;

Protein crystallography data

The structure of Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time., PDB code: 5mej was solved by K.M.Polyakov, T.V.Fedorova, S.Gavryushov, A.N.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.57 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.370, 84.390, 112.480, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 16.1

Other elements in 5mej:

The structure of Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time. also contains other interesting chemical elements:

Copper (Cu) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time. (pdb code 5mej). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time., PDB code: 5mej:

Sodium binding site 1 out of 1 in 5mej

Go back to Sodium Binding Sites List in 5mej
Sodium binding site 1 out of 1 in the Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Study of the X-Ray Induced Enzymatic Reduction of Molecular Oxygen to Water For Laccase From Steccherinum Murashkinskyi. First Structure of the Series with 3 Min Total X-Ray Exposition Time. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na514

b:16.6
occ:0.50
O A:HOH1074 2.0 16.3 0.5
O A:HOH777 2.3 19.2 1.0
O A:VAL317 2.4 10.4 1.0
O A:HOH1071 2.7 13.4 0.5
O A:HOH1084 2.7 16.7 0.5
O A:HOH1099 2.8 36.9 1.0
H A:VAL317 3.0 9.4 1.0
C A:VAL317 3.5 9.1 1.0
N A:VAL317 4.0 9.3 1.0
HA A:PRO318 4.0 8.7 1.0
O A:HOH1085 4.0 12.9 0.5
HB A:VAL317 4.1 9.3 1.0
O A:GLY319 4.2 10.6 1.0
CA A:VAL317 4.3 8.9 1.0
N A:PRO318 4.5 8.4 1.0
HA3 A:GLY316 4.5 10.4 1.0
CA A:PRO318 4.6 8.8 1.0
CB A:VAL317 4.7 9.3 1.0
C A:PRO318 4.8 8.9 1.0
O A:HOH862 4.9 19.8 1.0
O A:TYR419 4.9 11.1 1.0
O A:HOH896 4.9 26.2 1.0
H A:GLY319 4.9 9.0 1.0
O A:HOH798 5.0 20.3 1.0
N A:GLY319 5.0 9.0 1.0

Reference:

K.M.Polyakov, S.Gavryushov, S.Ivanova, T.V.Fedorova, O.A.Glazunova, A.N.Popov, O.V.Koroleva. Structural Study of the X-Ray-Induced Enzymatic Reduction of Molecular Oxygen to Water By Steccherinum Murashkinskyi Laccase: Insights Into the Reaction Mechanism. Acta Crystallogr D Struct V. 73 388 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28471364
DOI: 10.1107/S2059798317003667
Page generated: Tue Dec 15 11:17:45 2020

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