Atomistry » Sodium » PDB 5m1y-5mfs » 5mah
Atomistry »
  Sodium »
    PDB 5m1y-5mfs »
      5mah »

Sodium in PDB 5mah: Crystal Structure of Melk in Complex with An Inhibitor

Enzymatic activity of Crystal Structure of Melk in Complex with An Inhibitor

All present enzymatic activity of Crystal Structure of Melk in Complex with An Inhibitor:
2.7.10.2; 2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Melk in Complex with An Inhibitor, PDB code: 5mah was solved by G.Canevari, S.Re Depaolini, E.Casale, E.Felder, B.Kuster, S.Heinzlmeir, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.55 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.667, 63.704, 90.945, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 23.7

Other elements in 5mah:

The structure of Crystal Structure of Melk in Complex with An Inhibitor also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Melk in Complex with An Inhibitor (pdb code 5mah). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Melk in Complex with An Inhibitor, PDB code: 5mah:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5mah

Go back to Sodium Binding Sites List in 5mah
Sodium binding site 1 out of 2 in the Crystal Structure of Melk in Complex with An Inhibitor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Melk in Complex with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na404

b:67.0
occ:1.00
CE1 A:PHE206 3.8 30.7 1.0
CD1 A:PHE206 3.8 28.1 1.0
CZ A:PHE206 4.0 31.3 1.0
CG A:PHE206 4.1 28.4 1.0
CE2 A:PHE206 4.2 30.8 1.0
CD2 A:PHE206 4.2 29.7 1.0
O A:HOH553 4.5 46.8 1.0
CB A:PHE206 4.8 27.2 1.0

Sodium binding site 2 out of 2 in 5mah

Go back to Sodium Binding Sites List in 5mah
Sodium binding site 2 out of 2 in the Crystal Structure of Melk in Complex with An Inhibitor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Melk in Complex with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:32.4
occ:1.00
NE2 A:GLN274 3.4 35.3 1.0
N A:TRP273 3.4 29.7 1.0
N A:GLN274 3.5 29.9 1.0
CG A:GLN274 3.7 33.0 1.0
CA A:GLU272 3.7 31.9 1.0
CB A:GLN274 3.7 30.5 1.0
C A:GLU272 3.9 29.0 1.0
CD A:GLN274 4.1 34.2 1.0
CD1 A:TRP273 4.1 30.4 1.0
NE1 A:TRP273 4.1 29.5 1.0
CB A:GLU272 4.2 32.2 1.0
CA A:GLN274 4.2 30.4 1.0
CG A:TRP273 4.4 31.1 1.0
CA A:TRP273 4.4 30.9 1.0
C A:TRP273 4.4 30.4 1.0
CE2 A:TRP273 4.5 30.3 1.0
O A:VAL271 4.5 27.7 1.0
CG A:GLU272 4.5 37.1 1.0
CD2 A:TRP273 4.6 31.7 1.0
N A:GLU272 4.9 28.6 1.0
O A:GLU272 5.0 30.7 1.0

Reference:

S.Klaeger, S.Heinzlmeir, M.Wilhelm, H.Polzer, B.Vick, P.A.Koenig, M.Reinecke, B.Ruprecht, S.Petzoldt, C.Meng, J.Zecha, K.Reiter, H.Qiao, D.Helm, H.Koch, M.Schoof, G.Canevari, E.Casale, S.R.Depaolini, A.Feuchtinger, Z.Wu, T.Schmidt, L.Rueckert, W.Becker, J.Huenges, A.K.Garz, B.O.Gohlke, D.P.Zolg, G.Kayser, T.Vooder, R.Preissner, H.Hahne, N.Tonisson, K.Kramer, K.Gotze, F.Bassermann, J.Schlegl, H.C.Ehrlich, S.Aiche, A.Walch, P.A.Greif, S.Schneider, E.R.Felder, J.Ruland, G.Medard, I.Jeremias, K.Spiekermann, B.Kuster. The Target Landscape of Clinical Kinase Drugs. Science V. 358 2017.
ISSN: ESSN 1095-9203
PubMed: 29191878
DOI: 10.1126/SCIENCE.AAN4368
Page generated: Mon Oct 7 22:32:04 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy