Sodium in PDB 5m9f: Structure of the Two C-Terminal Domains of Bacteriophage K GP144

The structure of Structure of the Two C-Terminal Domains of Bacteriophage K GP144, PDB code: 5m9f was solved by A.Liu, T.H.Nguyen, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.33 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.690, 81.311, 154.239, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 20.6

The binding sites of Sodium atom in the Structure of the Two C-Terminal Domains of Bacteriophage K GP144 (pdb code 5m9f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Two C-Terminal Domains of Bacteriophage K GP144, PDB code: 5m9f:

Sodium binding site 1 out of 1 in the Structure of the Two C-Terminal Domains of Bacteriophage K GP144


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Two C-Terminal Domains of Bacteriophage K GP144 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:21.0 occ:1.00 O C:HOH626 2.3 20.8 1.0 OG B:SER336 2.4 22.4 1.0 OG A:SER336 2.4 19.9 1.0 O A:HOH756 2.4 20.4 1.0 OG C:SER336 2.4 22.2 1.0 O A:HOH722 2.5 20.8 1.0 CB A:SER336 3.1 19.2 1.0 CB B:SER336 3.2 21.7 1.0 CB C:SER336 3.2 20.7 1.0 OD1 A:ASN320 4.2 20.3 1.0 OD1 C:ASN320 4.3 21.8 1.0 ND2 B:ASN320 4.3 21.2 1.0 CA C:SER336 4.4 17.8 1.0 CA B:SER336 4.4 19.9 1.0 CA A:SER336 4.4 18.5 1.0 O B:HOH541 4.7 26.9 1.0 O A:PRO337 4.7 18.1 1.0 O C:HOH694 4.7 33.0 1.0 O B:PRO337 4.8 17.0 1.0 O B:HOH587 4.8 21.5 1.0 O A:HOH665 4.9 20.9 1.0 O C:HOH718 4.9 20.6 1.0 O C:PRO337 4.9 19.5 1.0

A.Liu, T.H.Nguyen, A.Pichel-Beleiro, A.Coffey, M.J.Van Raaij. Crystal Structure of A Putative Receptor-Binding Protein of Staphylococcus Virus K To Be Published.