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Sodium in PDB 5lt9: Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles

Protein crystallography data

The structure of Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles, PDB code: 5lt9 was solved by J.A.Gavira, M.Rico-Jimenez, A.Ortega, M.Conejero-Muriel, I.Zhulin, T.Krell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.35 / 3.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.729, 111.729, 117.551, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles (pdb code 5lt9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles, PDB code: 5lt9:

Sodium binding site 1 out of 1 in 5lt9

Go back to Sodium Binding Sites List in 5lt9
Sodium binding site 1 out of 1 in the Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Evolution of Paralogous Chemoreceptors with Similar Chemoattractant Profiles within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:78.2
occ:1.00
NH2 A:ARG241 2.7 89.2 1.0
NH1 A:ARG241 3.3 89.0 1.0
CZ A:ARG241 3.4 86.2 1.0
O A:GLY190 4.1 0.2 1.0
O A:MET191 4.1 0.4 1.0
C A:MET191 4.3 1.0 1.0
N A:GLY192 4.6 96.4 1.0
CB A:ASP263 4.7 87.3 1.0
NE A:ARG241 4.7 82.2 1.0
CA A:GLY192 4.8 86.3 1.0
CA A:MET191 5.0 0.8 1.0
OD2 A:ASP263 5.0 0.4 1.0

Reference:

J.A.Gavira, M.Rico-Jimenez, T.Krell. Ligand Binding Domain of Pseudomonas Aeruginosa PAO1 Amino Acid Chemorecpetors Pctb in Complex with L-Arg To Be Published.
Page generated: Mon Oct 7 22:24:22 2024

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