Sodium in PDB 5ljz: Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation

The structure of Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation, PDB code: 5ljz was solved by P.Guardado-Calvo, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.64 / 1.60
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	107.636, 107.636, 127.666, 90.00, 90.00, 120.00
R / Rfree (%)	13.8 / 17.8

The binding sites of Sodium atom in the Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation (pdb code 5ljz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation, PDB code: 5ljz:

Sodium binding site 1 out of 1 in the Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hantavirus Envelope Glycoprotein Gc in Postfusion Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na505 b:18.4 occ:0.33 OG A:SER243 2.4 17.9 1.0 O A:HOH847 2.4 17.9 1.0 CB A:SER243 3.4 16.3 1.0 N A:SER243 4.0 15.9 1.0 O A:HOH960 4.2 17.4 0.3 CA A:SER243 4.2 16.2 1.0 C A:GLY242 4.4 15.0 1.0 OD1 A:ASP259 4.4 18.5 1.0 OD2 A:ASP259 4.5 19.9 1.0 O A:PRO241 4.6 21.4 1.0 CA A:GLY242 4.7 17.8 1.0 O A:GLY242 4.9 17.4 1.0 CG A:ASP259 5.0 16.2 1.0

P.Guardado-Calvo, E.A.Bignon, E.Stettner, S.A.Jeffers, J.Perez-Vargas, G.Pehau-Arnaudet, M.A.Tortorici, J.L.Jestin, P.England, N.D.Tischler, F.A.Rey. Mechanistic Insight Into Bunyavirus-Induced Membrane Fusion From Structure-Function Analyses of the Hantavirus Envelope Glycoprotein Gc. Plos Pathog. V. 12 05813 2016.
ISSN: ESSN 1553-7374
PubMed: 27783711
DOI: 10.1371/JOURNAL.PPAT.1005813