Sodium in PDB 5ljd: Crystal Structure of Holo Human CRBP1/K40L Mutant

The structure of Crystal Structure of Holo Human CRBP1/K40L Mutant, PDB code: 5ljd was solved by G.Zanotti, F.Vallese, R.Berni, I.Menozzi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.78 / 1.61
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.483, 47.187, 81.033, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 23.4

The binding sites of Sodium atom in the Crystal Structure of Holo Human CRBP1/K40L Mutant (pdb code 5ljd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Holo Human CRBP1/K40L Mutant, PDB code: 5ljd:

Sodium binding site 1 out of 1 in the Crystal Structure of Holo Human CRBP1/K40L Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Holo Human CRBP1/K40L Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:13.8 occ:1.00 OD2 A:ASP63 2.0 17.9 1.0 O A:HOH433 2.1 22.0 1.0 O A:HOH437 2.6 27.6 1.0 CG A:ASP63 2.7 20.7 1.0 OD1 A:ASP63 2.8 17.6 1.0 HD11 A:ILE50 3.7 27.1 1.0 HE1 A:HIS48 3.8 23.8 1.0 CB A:ASP63 4.0 16.6 1.0 HB3 A:ASP63 4.2 20.0 1.0 O A:HOH363 4.2 25.4 1.0 O A:HOH368 4.2 26.8 1.0 HB2 A:ASP63 4.3 20.0 1.0 HG12 A:ILE50 4.5 26.7 1.0 CD1 A:ILE50 4.5 22.6 1.0 CE1 A:HIS48 4.6 19.8 1.0 HD13 A:ILE50 4.6 27.1 1.0 NE2 A:HIS48 4.9 15.3 1.0 CG1 A:ILE50 5.0 22.2 1.0

I.Menozzi, F.Vallese, E.Polverini, C.Folli, R.Berni, G.Zanotti. Structural and Molecular Determinants Affecting the Interaction of Retinol with Human CRBP1. J. Struct. Biol. V. 197 330 2017.
ISSN: ESSN 1095-8657
PubMed: 28057518
DOI: 10.1016/J.JSB.2016.12.012