Sodium in PDB 5lhl: Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus

All present enzymatic activity of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus:
1.10.3.2;

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl was solved by A.G.Gabdulkhakov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.36 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.640, 94.720, 117.400, 90.00, 90.67, 90.00
R / Rfree (%)	16.7 / 21

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus also contains other interesting chemical elements:

Copper	(Cu)	24 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus (pdb code 5lhl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na406 b:31.5 occ:1.00 O B:HOH565 2.4 21.1 1.0 O A:HOH597 2.4 18.7 1.0 O B:HOH564 2.4 23.0 1.0 O C:HOH650 2.4 19.9 1.0 O C:HOH676 2.6 22.8 1.0 O A:HOH533 2.7 22.1 1.0 O B:HOH588 3.7 19.5 1.0 O C:HOH679 3.8 18.7 1.0 O A:HOH556 4.1 16.7 1.0 O B:ASP243 4.2 16.1 1.0 O A:ASP243 4.4 15.4 1.0 O C:ASP243 4.5 16.3 1.0 OG B:SER256 4.5 19.4 1.0 OG C:SER256 4.7 17.1 1.0 OG A:SER256 4.8 20.5 1.0 CB B:SER256 5.0 19.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range: probe atom residue distance (Å) B Occ D:Na408 b:28.2 occ:1.00 O F:HOH589 2.0 22.3 1.0 O E:HOH590 2.4 20.6 1.0 O F:HOH570 2.5 22.0 1.0 O E:HOH528 2.5 21.1 1.0 O D:HOH584 2.5 17.7 1.0 O D:HOH532 2.6 22.1 1.0 O F:HOH567 3.8 19.8 1.0 O D:HOH566 3.9 21.4 1.0 O E:HOH577 3.9 15.4 1.0 O E:ASP243 4.2 17.0 1.0 O D:ASP243 4.4 18.1 1.0 O F:ASP243 4.4 19.3 1.0 OG F:SER256 4.7 17.0 1.0 OG E:SER256 4.7 24.2 1.0 OG D:SER256 4.8 20.3 1.0

A.Gabdulkhakov, S.Tischenko, A.Lisov, A.Leontievsky. Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus To Be Published.