Atomistry » Sodium » PDB 5l4j-5llm » 5lhl
Atomistry »
  Sodium »
    PDB 5l4j-5llm »
      5lhl »

Sodium in PDB 5lhl: Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus

Enzymatic activity of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus

All present enzymatic activity of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl was solved by A.G.Gabdulkhakov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.36 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.640, 94.720, 117.400, 90.00, 90.67, 90.00
R / Rfree (%) 16.7 / 21

Other elements in 5lhl:

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus also contains other interesting chemical elements:

Copper (Cu) 24 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus (pdb code 5lhl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5lhl

Go back to Sodium Binding Sites List in 5lhl
Sodium binding site 1 out of 2 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na406

b:31.5
occ:1.00
O B:HOH565 2.4 21.1 1.0
O A:HOH597 2.4 18.7 1.0
O B:HOH564 2.4 23.0 1.0
O C:HOH650 2.4 19.9 1.0
O C:HOH676 2.6 22.8 1.0
O A:HOH533 2.7 22.1 1.0
O B:HOH588 3.7 19.5 1.0
O C:HOH679 3.8 18.7 1.0
O A:HOH556 4.1 16.7 1.0
O B:ASP243 4.2 16.1 1.0
O A:ASP243 4.4 15.4 1.0
O C:ASP243 4.5 16.3 1.0
OG B:SER256 4.5 19.4 1.0
OG C:SER256 4.7 17.1 1.0
OG A:SER256 4.8 20.5 1.0
CB B:SER256 5.0 19.1 1.0

Sodium binding site 2 out of 2 in 5lhl

Go back to Sodium Binding Sites List in 5lhl
Sodium binding site 2 out of 2 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na408

b:28.2
occ:1.00
O F:HOH589 2.0 22.3 1.0
O E:HOH590 2.4 20.6 1.0
O F:HOH570 2.5 22.0 1.0
O E:HOH528 2.5 21.1 1.0
O D:HOH584 2.5 17.7 1.0
O D:HOH532 2.6 22.1 1.0
O F:HOH567 3.8 19.8 1.0
O D:HOH566 3.9 21.4 1.0
O E:HOH577 3.9 15.4 1.0
O E:ASP243 4.2 17.0 1.0
O D:ASP243 4.4 18.1 1.0
O F:ASP243 4.4 19.3 1.0
OG F:SER256 4.7 17.0 1.0
OG E:SER256 4.7 24.2 1.0
OG D:SER256 4.8 20.3 1.0

Reference:

A.Gabdulkhakov, S.Tischenko, A.Lisov, A.Leontievsky. Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus To Be Published.
Page generated: Tue Dec 15 11:13:05 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy