Sodium in PDB 5lbv: Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization

The structure of Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization, PDB code: 5lbv was solved by G.Barba-Spaeth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.55 / 2.20
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	64.628, 213.566, 124.024, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 23.9

The binding sites of Sodium atom in the Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization (pdb code 5lbv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization, PDB code: 5lbv:

Sodium binding site 1 out of 1 in the Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis of Zika and Dengue Virus Potent Antibody Cross- Neutralization within 5.0Å range: probe atom residue distance (Å) B Occ B:Na506 b:51.5 occ:1.00 O B:ARG164 2.4 43.1 1.0 O B:ASP161 2.6 48.5 1.0 O B:HIS158 2.9 58.9 1.0 C B:ASP161 3.5 49.6 1.0 C B:ARG164 3.6 41.3 1.0 CA B:GLU162 3.7 45.5 1.0 O B:THR179 3.8 47.0 1.0 O B:GLU162 3.9 48.3 1.0 C B:GLU162 4.0 49.1 1.0 N B:GLU162 4.0 46.0 1.0 C B:HIS158 4.2 61.5 1.0 N B:ARG164 4.4 38.2 1.0 CA B:ALA165 4.4 37.5 1.0 N B:ALA165 4.4 37.1 1.0 CB B:ALA165 4.4 38.1 1.0 CA B:ARG164 4.5 36.5 1.0 N B:ASP161 4.7 51.4 1.0 CA B:ASP161 4.7 48.3 1.0 N B:ASN163 4.8 45.5 1.0 C B:THR179 4.9 48.4 1.0 CA B:LEU180 4.9 41.0 1.0 O B:GLU159 5.0 66.0 1.0

G.Barba-Spaeth, W.Dejnirattisai, A.Rouvinski, M.C.Vaney, I.Medits, A.Sharma, E.Simon-Loriere, A.Sakuntabhai, V.M.Cao-Lormeau, A.Haouz, P.England, K.Stiasny, J.Mongkolsapaya, F.X.Heinz, G.R.Screaton, F.A.Rey. Structural Basis of Potent Zika-Dengue Virus Antibody Cross-Neutralization. Nature V. 536 48 2016.
ISSN: ESSN 1476-4687
PubMed: 27338953
DOI: 10.1038/NATURE18938