Sodium in PDB 5l8z: Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum

The structure of Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum, PDB code: 5l8z was solved by K.M.Boyko, M.A.Gorbacheva, T.V.Rakitina, D.A.Korzhenevskiy, D.E.Kamashev, A.A.Vanyushkina, A.V.Lipkin, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.64 / 1.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	57.000, 39.010, 38.780, 90.00, 108.36, 90.00
R / Rfree (%)	18 / 21.1

The binding sites of Sodium atom in the Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum (pdb code 5l8z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum, PDB code: 5l8z:

Sodium binding site 1 out of 1 in the Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Thermostable Dna-Binding Hu Protein From Micoplasma Spiroplasma Melliferum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:17.1 occ:1.00 OG1 A:THR21 2.8 16.0 1.0 N A:THR21 3.0 11.6 1.0 O A:HOH289 3.3 25.4 1.0 CB A:THR21 3.4 11.9 1.0 N A:LYS20 3.6 11.5 1.0 CB A:SER19 3.6 12.3 1.0 OG A:SER19 3.7 13.9 1.0 CA A:THR21 3.8 12.0 1.0 CB A:LYS20 3.9 13.9 1.0 C A:LYS20 3.9 11.0 1.0 CA A:LYS20 4.0 11.9 1.0 O A:HOH253 4.1 20.9 1.0 C A:SER19 4.3 13.1 1.0 CA A:SER19 4.5 11.9 1.0 O A:HOH230 4.6 19.0 1.0 CG2 A:THR21 4.8 13.9 1.0 CG A:LYS20 4.9 15.8 0.5

K.M.Boyko, T.V.Rakitina, D.A.Korzhenevskiy, A.V.Vlaskina, Y.K.Agapova, D.E.Kamashev, S.Y.Kleymenov, V.O.Popov. Structural Basis of the High Thermal Stability of the Histone-Like Hu Protein From the Mollicute Spiroplasma Melliferum KC3. Sci Rep V. 6 36366 2016.
ISSN: ESSN 2045-2322
PubMed: 27808161
DOI: 10.1038/SREP36366