Sodium in PDB 5kz6: 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis.

The structure of 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis., PDB code: 5kz6 was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.10 / 1.25
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	55.243, 94.147, 243.571, 90.00, 90.00, 90.00
R / Rfree (%)	11.7 / 14

The structure of 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Zinc	(Zn)	6 atoms

The binding sites of Sodium atom in the 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. (pdb code 5kz6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis., PDB code: 5kz6:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:22.3 occ:1.00 OG A:SER79 2.3 24.8 1.0 O A:HOH837 2.4 21.9 0.5 O A:PRO80 2.5 14.6 0.5 O A:PRO80 2.5 14.4 0.5 O A:HOH677 2.5 21.9 1.0 O A:HOH705 2.7 21.8 1.0 CB A:SER79 3.5 21.8 1.0 C A:PRO80 3.6 13.8 0.5 C A:PRO80 3.6 13.3 0.5 N A:PRO80 3.8 14.6 0.5 N A:PRO80 3.8 13.9 0.5 C A:SER79 3.9 15.4 1.0 CD A:PRO80 4.0 14.5 0.5 CG A:PRO80 4.2 13.7 0.5 O A:GLY83 4.2 16.5 1.0 CA A:PRO80 4.2 14.6 0.5 CD A:PRO80 4.3 15.7 0.5 CA A:SER79 4.3 17.2 1.0 CA A:PRO80 4.3 13.4 0.5 O A:SER79 4.3 15.4 1.0 O A:HOH597 4.4 29.8 0.5 OD1 A:ASP85 4.5 21.8 1.0 O A:HOH800 4.5 18.4 0.5 CB A:PRO80 4.6 16.0 0.5 N A:VAL81 4.7 13.2 1.0 O A:HOH800 4.7 25.8 0.5 CB A:PRO80 4.9 13.8 0.5 CA A:VAL81 4.9 14.3 1.0 CG A:PRO80 5.0 16.5 0.5

Sodium binding site 2 out of 3 in the 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:14.9 occ:0.50 O B:HOH884 2.0 28.0 1.0 OD2 B:ASP246 2.2 15.4 1.0 O B:HOH864 2.2 16.4 1.0 O B:HOH714 2.4 27.6 1.0 O B:HOH973 2.6 34.1 1.0 CG B:ASP246 3.0 13.2 1.0 O B:HOH964 3.1 19.3 0.5 CB B:ASP246 3.6 11.9 1.0 OD1 B:ASP246 3.9 13.6 1.0 N B:LYS315 4.3 14.4 0.5 O B:HOH964 4.3 23.5 0.5 N B:LYS315 4.4 14.8 0.5 N B:ASP246 4.4 10.3 1.0 CA B:GLY314 4.5 15.1 1.0 CA B:ASP246 4.6 10.4 1.0 O B:HOH693 4.6 29.2 0.5 CG B:LYS315 4.6 18.7 0.5 CB B:LYS315 4.9 16.6 0.5 CE1 B:PHE312 4.9 13.3 1.0 O B:HOH997 5.0 28.7 0.7 C B:GLY314 5.0 15.2 1.0

Sodium binding site 3 out of 3 in the 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na403 b:17.1 occ:1.00 ND1 B:HIS178 2.4 13.7 1.0 O B:HOH555 2.4 14.0 1.0 O B:HOH939 2.7 33.4 0.5 CE1 B:HIS178 3.2 15.4 1.0 CG B:HIS178 3.2 11.2 1.0 CB B:HIS178 3.6 9.7 1.0 OE1 B:GLN129 4.1 16.2 1.0 NE2 B:GLN129 4.1 9.2 1.0 NE2 B:HIS178 4.1 15.6 1.0 CD2 B:HIS178 4.2 12.4 1.0 O B:HOH777 4.4 10.5 1.0 CA B:HIS178 4.4 9.9 1.0 CD B:GLN129 4.5 10.8 1.0 O B:HOH977 4.6 13.7 1.0 O B:HOH740 4.9 19.5 1.0

G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.25 Angstrom Crystal Structure of Chitinase From Bacillus Anthracis. To Be Published.