Sodium in PDB 5ky1: Hen Egg White Lysozyme at 278K, Data Set 10

All present enzymatic activity of Hen Egg White Lysozyme at 278K, Data Set 10:
3.2.1.17;

The structure of Hen Egg White Lysozyme at 278K, Data Set 10, PDB code: 5ky1 was solved by S.Russi, A.Gonzalez, L.R.Kenner, D.A.Keedy, J.S.Fraser, H.Van Den Bedem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.41 / 1.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.161, 79.161, 37.955, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.8

The binding sites of Sodium atom in the Hen Egg White Lysozyme at 278K, Data Set 10 (pdb code 5ky1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme at 278K, Data Set 10, PDB code: 5ky1:

Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme at 278K, Data Set 10


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme at 278K, Data Set 10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:24.4 occ:1.00 O A:SER60 2.2 18.7 1.0 O A:ARG73 2.4 31.5 1.0 O A:HOH340 2.4 28.7 1.0 O A:CYS64 2.5 15.8 1.0 O A:HOH338 2.5 19.3 1.0 OG A:SER72 2.5 30.9 1.0 CB A:SER72 3.3 32.0 1.0 C A:CYS64 3.4 14.7 1.0 C A:SER60 3.5 15.3 1.0 C A:ARG73 3.5 26.3 1.0 CA A:ASN65 3.8 14.8 0.6 N A:ARG73 3.9 25.5 1.0 CA A:ASN65 4.0 16.1 0.4 C A:SER72 4.0 31.5 1.0 N A:ASN65 4.1 14.7 0.6 N A:ASN65 4.1 15.4 0.4 CA A:SER60 4.2 14.0 1.0 CA A:SER72 4.2 32.4 1.0 N A:ASN74 4.4 23.7 1.0 CA A:ARG73 4.4 26.6 1.0 O A:ARG61 4.4 23.4 1.0 C A:ARG61 4.4 22.3 1.0 CB A:SER60 4.4 13.7 1.0 N A:CYS64 4.4 14.8 1.0 N A:ARG61 4.5 15.8 1.0 OD1 A:ASN65 4.5 17.8 0.6 CA A:ASN74 4.5 21.9 1.0 CA A:CYS64 4.6 14.4 1.0 CB A:ASN65 4.6 16.6 0.6 CB A:THR69 4.6 14.8 0.7 O A:SER72 4.6 31.2 1.0 CA A:ARG61 4.6 19.6 1.0 O A:HOH341 4.7 21.4 1.0 N A:ASP66 4.7 14.3 1.0 CB A:ASN74 4.7 21.7 1.0 N A:TRP62 4.8 20.6 1.0 C A:ASN65 4.9 14.0 0.6 C A:ASN65 4.9 14.8 0.4 N A:TRP63 5.0 15.8 0.3 CG2 A:THR69 5.0 14.5 0.7

S.Russi, A.Gonzalez, L.R.Kenner, D.A.Keedy, J.S.Fraser, H.Van Den Bedem. Conformational Variation of Proteins at Room Temperature Is Not Dominated By Radiation Damage. J Synchrotron Radiat V. 24 73 2017.
ISSN: ESSN 1600-5775
PubMed: 28009548
DOI: 10.1107/S1600577516017343