Sodium in PDB 5kws: Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose

The structure of Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose, PDB code: 5kws was solved by Y.Kim, N.Maltseva, R.Mulligan, S.Grimshaw, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.25 / 1.32
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.236, 56.753, 69.129, 90.00, 90.00, 90.00
R / Rfree (%)	14.4 / 16

The structure of Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose (pdb code 5kws). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose, PDB code: 5kws:

Sodium binding site 1 out of 1 in the Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na407 b:29.7 occ:1.00 O A:HOH747 2.7 30.2 1.0 O A:HOH554 2.8 30.4 1.0 O A:HOH796 2.8 34.3 1.0 O A:VAL19 2.8 18.5 1.0 CG1 A:VAL19 3.5 19.9 1.0 N A:ALA23 3.6 18.3 1.0 C A:VAL19 3.7 18.2 1.0 CB A:LYS22 3.7 19.5 1.0 CB A:ALA23 3.9 19.7 1.0 CA A:VAL19 3.9 18.6 1.0 CA A:ALA23 4.1 18.1 1.0 C A:LYS22 4.1 19.1 1.0 O A:HOH613 4.2 32.1 1.0 CB A:VAL19 4.3 19.9 1.0 CA A:LYS22 4.4 19.1 1.0 OD1 A:ASN259 4.4 25.6 1.0 N A:LYS22 4.8 18.2 1.0 CD A:LYS22 4.8 24.7 1.0 CG A:LYS22 4.8 21.9 1.0 O A:LYS22 4.9 18.9 1.0 N A:VAL20 4.9 17.1 1.0

Y.Kim, N.Maltseva, R.Mulligan, S.Grimshaw, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Galactose Binding Protein From Yersinia Pestis in the Complex with Beta D Glucose To Be Published.