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Sodium in PDB 5j0s: Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Enzymatic activity of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
All present enzymatic activity of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s
was solved by
V.K.Batra,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.00 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 54.560, 79.530, 54.890, 90.00, 105.68, 90.00 |
| R / Rfree (%) | 19.9 / 24.6 |
Sodium Binding Sites:
The binding sites of Sodium atom in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
(pdb code 5j0s). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s:
Jump to Sodium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Sodium where determined in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s:
Jump to Sodium binding site number: 1; 2; 3; 4;
Sodium binding site 1 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 1 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 2 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 2 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 3 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 3 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 4 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 4 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Reference:
V.K.Batra,
W.A.Beard,
L.C.Pedersen,
S.H.Wilson.
Structures of Dna Polymerase Mispaired Dna Termini Transitioning to Pre-Catalytic Complexes Support An Induced-Fit Fidelity Mechanism. Structure V. 24 1863 2016.
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
Page generated: Mon Oct 7 21:45:31 2024
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
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