Sodium »
PDB 5inb-5j2c »
5j0s »
Sodium in PDB 5j0s: Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Enzymatic activity of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
All present enzymatic activity of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s
was solved by
V.K.Batra,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.00 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 54.560, 79.530, 54.890, 90.00, 105.68, 90.00 |
| R / Rfree (%) | 19.9 / 24.6 |
Sodium Binding Sites:
The binding sites of Sodium atom in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
(pdb code 5j0s). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s:
Jump to Sodium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Sodium where determined in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus, PDB code: 5j0s:
Jump to Sodium binding site number: 1; 2; 3; 4;
Sodium binding site 1 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 1 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 2 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 2 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 3 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 3 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Sodium binding site 4 out of 4 in 5j0s
Go back to
Sodium Binding Sites List in 5j0s
Sodium binding site 4 out
of 4 in the Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Binary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus within 5.0Å range:
|
Reference:
V.K.Batra,
W.A.Beard,
L.C.Pedersen,
S.H.Wilson.
Structures of Dna Polymerase Mispaired Dna Termini Transitioning to Pre-Catalytic Complexes Support An Induced-Fit Fidelity Mechanism. Structure V. 24 1863 2016.
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
Page generated: Mon Oct 7 21:45:31 2024
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
Last articles
Zn in 9J0NZn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
