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Sodium in PDB 5iuy: Structural Insights of the Outer-Membrane Channel Oprn

Protein crystallography data

The structure of Structural Insights of the Outer-Membrane Channel Oprn, PDB code: 5iuy was solved by Y.Ntsogo, C.Garnier, G.Phan, L.Monlezun, P.Benas, I.Broutin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 182.18 / 2.29
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 257.648, 257.648, 81.511, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.5

Other elements in 5iuy:

The structure of Structural Insights of the Outer-Membrane Channel Oprn also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Insights of the Outer-Membrane Channel Oprn (pdb code 5iuy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Insights of the Outer-Membrane Channel Oprn, PDB code: 5iuy:

Sodium binding site 1 out of 1 in 5iuy

Go back to Sodium Binding Sites List in 5iuy
Sodium binding site 1 out of 1 in the Structural Insights of the Outer-Membrane Channel Oprn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Insights of the Outer-Membrane Channel Oprn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na502

b:34.3
occ:1.00
OD1 B:ASP73 2.3 34.2 1.0
O B:ASP73 2.5 32.5 1.0
O B:HOH663 2.6 35.9 1.0
OG A:SER332 2.6 27.3 1.0
C B:ASP73 3.3 31.6 1.0
CG B:ASP73 3.4 35.7 1.0
CB A:SER332 3.6 27.1 1.0
OD1 B:ASP77 3.6 51.4 1.0
OD2 B:ASP77 3.8 53.7 1.0
CB B:ASN76 3.8 40.2 1.0
CA B:ASP73 3.8 31.7 1.0
CG B:ASP77 3.9 47.9 1.0
CB B:ASP73 4.2 31.8 1.0
O B:HOH799 4.2 43.7 1.0
OD2 B:ASP73 4.2 30.9 1.0
OD1 B:ASN76 4.3 47.2 1.0
N B:VAL74 4.3 31.9 1.0
OD1 A:ASP329 4.4 38.4 1.0
CA A:SER332 4.5 27.8 1.0
N B:ASP77 4.5 36.8 1.0
CG B:ASN76 4.5 44.5 1.0
CA B:ASN76 4.7 39.6 1.0
C B:ASN76 4.8 39.2 1.0
N B:ASN76 4.8 33.6 1.0
CA B:VAL74 4.8 31.6 1.0
NH2 A:ARG336 4.9 40.2 1.0
OD2 A:ASP329 5.0 35.0 1.0

Reference:

Y.V.Ntsogo Enguene, G.Phan, C.Garnier, A.Ducruix, T.Prange, I.Broutin. Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. Plos One V. 12 84045 2017.
ISSN: ESSN 1932-6203
PubMed: 28886086
DOI: 10.1371/JOURNAL.PONE.0184045
Page generated: Tue Dec 15 11:06:46 2020

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