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Sodium in PDB 5ir5: Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution

Enzymatic activity of Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution

All present enzymatic activity of Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution:
1.13.11.12; 1.13.11.33;

Protein crystallography data

The structure of Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution, PDB code: 5ir5 was solved by J.Kalms, S.Banthiya, E.Galemou Yoga, H.Kuhn, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.80 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 133.093, 116.353, 42.721, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 18.2

Other elements in 5ir5:

The structure of Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution (pdb code 5ir5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution, PDB code: 5ir5:

Sodium binding site 1 out of 1 in 5ir5

Go back to Sodium Binding Sites List in 5ir5
Sodium binding site 1 out of 1 in the Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Wild-Type Bacterial Lipoxygenase From Pseudomonas Aeruginosa Pa-Lox with Space Group P21212 at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na706

b:58.4
occ:1.00
 O A:HOH1244 2.6 48.0 1.0
O A:HOH1108 2.8 29.4 1.0
O A:HOH1173 3.0 53.9 1.0
CD2 A:LEU646 3.7 33.5 1.0
O A:HOH1002 3.8 42.1 1.0
CB A:PRO632 3.8 35.3 1.0
CG2 A:THR640 3.9 36.5 1.0
CB A:THR640 4.3 37.1 1.0
CG A:PRO632 4.4 39.9 1.0
O A:PHE634 4.5 33.5 1.0
NH2 A:ARG624 4.7 54.2 1.0
CA A:PRO632 4.8 32.5 1.0
O A:TYR623 5.0 28.8 1.0

Reference:

S.Banthiya, J.Kalms, E.Galemou Yoga, I.Ivanov, X.Carpena, M.Hamberg, H.Kuhn, P.Scheerer. Structural and Functional Basis of Phospholipid Oxygenase Activity of Bacterial Lipoxygenase From Pseudomonas Aeruginosa. Biochim.Biophys.Acta V.1861 1681 2016.
ISSN: ISSN 0006-3002
PubMed: 27500637
DOI: 10.1016/J.BBALIP.2016.08.002
Page generated: Tue Dec 15 11:06:33 2020

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