Sodium in PDB 5io8: Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.

The structure of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad., PDB code: 5io8 was solved by N.K.Pandey, S.Ray, M.Suar, N.S.Bhavesh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.30 / 2.19
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.115, 60.277, 62.603, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 24.5

The structure of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. also contains other interesting chemical elements:

Iodine

(I)

14 atoms

The binding sites of Sodium atom in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. (pdb code 5io8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad., PDB code: 5io8:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na208 b:43.1 occ:1.00 NH1 B:ARG85 2.3 49.8 1.0 OG A:SER78 2.3 57.8 1.0 NA A:NA210 2.5 46.0 1.0 CB A:SER78 3.3 52.2 1.0 CZ B:ARG85 3.4 50.6 1.0 CA A:SER78 3.4 45.8 1.0 CB B:GLU81 3.6 39.2 1.0 NH2 B:ARG85 3.9 53.3 1.0 N A:SER78 4.2 44.1 1.0 O B:SER78 4.2 37.9 1.0 NE B:ARG85 4.3 48.6 1.0 NH1 A:ARG85 4.3 68.7 1.0 N B:GLN82 4.5 35.0 1.0 C A:SER78 4.5 43.3 1.0 C B:GLU81 4.5 36.2 1.0 CB A:GLU81 4.5 36.7 1.0 CD2 A:PHE77 4.5 60.1 1.0 CA B:SER78 4.6 39.7 1.0 O A:SER78 4.6 38.7 1.0 CD B:ARG85 4.6 45.2 1.0 OG B:SER78 4.6 51.1 1.0 CA B:GLU81 4.7 36.9 1.0 NH2 A:ARG85 4.7 66.6 1.0 CB B:SER78 4.8 44.5 1.0 CE2 A:PHE77 4.8 57.4 1.0 O A:PHE77 4.9 40.9 1.0 C A:PHE77 4.9 44.4 1.0 C B:SER78 4.9 39.1 1.0 CZ A:ARG85 5.0 66.0 1.0 O B:GLU81 5.0 36.7 1.0

Sodium binding site 2 out of 5 in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na209 b:28.9 occ:1.00 OG1 A:THR41 3.1 36.2 1.0 O A:HOH317 4.0 39.6 1.0 O A:HOH302 4.1 52.0 1.0 CB A:THR41 4.2 36.9 1.0 CG2 A:THR41 4.4 35.0 1.0 CA A:THR41 4.8 33.2 1.0

Sodium binding site 3 out of 5 in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na210 b:46.0 occ:1.00 NH1 A:ARG85 2.2 68.7 1.0 NA A:NA208 2.5 43.1 1.0 CZ A:ARG85 3.2 66.0 1.0 O A:HOH320 3.4 52.0 1.0 NH2 A:ARG85 3.6 66.6 1.0 CB A:GLU81 3.7 36.7 1.0 CB B:SER78 3.7 44.5 1.0 CA B:SER78 3.8 39.7 1.0 O A:SER78 3.9 38.7 1.0 OG A:SER78 4.1 57.8 1.0 OG B:SER78 4.1 51.1 1.0 CA A:SER78 4.2 45.8 1.0 NE A:ARG85 4.2 60.3 1.0 N A:GLN82 4.2 34.1 1.0 CB A:SER78 4.4 52.2 1.0 C A:GLU81 4.4 35.3 1.0 NH1 B:ARG85 4.4 49.8 1.0 C A:SER78 4.5 43.3 1.0 CD A:ARG85 4.5 52.5 1.0 CB B:GLU81 4.5 39.2 1.0 N B:SER78 4.6 37.6 1.0 CD2 B:PHE77 4.6 55.4 1.0 CA A:GLN82 4.6 35.0 1.0 CA A:GLU81 4.7 37.9 1.0 CE2 B:PHE77 4.8 55.8 1.0 O B:SER78 4.8 37.9 1.0 C B:SER78 4.8 39.1 1.0 CB A:GLN82 4.9 38.3 1.0 O A:GLU81 4.9 34.2 1.0

Sodium binding site 4 out of 5 in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na211 b:72.4 occ:1.00 CB A:HIS21 3.7 75.3 1.0 ND1 A:HIS21 4.4 69.8 1.0 CG A:HIS21 4.5 70.6 1.0 CA A:HIS21 4.6 73.7 1.0

Sodium binding site 5 out of 5 in the Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Salmonella Typhimurium Virg-Like (Stv) Protein at 2.19 Angstrom Resolution Solved By Iodine Sad. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na208 b:29.9 occ:1.00 O B:HOH321 3.6 53.1 1.0 CD1 B:ILE29 3.8 44.5 1.0 CA B:ALA14 3.8 36.2 1.0 N B:ALA14 4.0 35.3 1.0 CG1 B:ILE29 4.0 39.9 1.0 O B:PRO13 4.1 34.3 1.0 C B:PRO13 4.1 34.9 1.0 CD1 B:LEU24 4.2 42.0 1.0 CB B:ALA14 4.3 35.5 1.0 CB B:PRO13 4.6 32.1 1.0 CA B:GLN20 4.6 62.1 1.0 O B:GLN20 4.7 66.2 1.0 CG B:LEU24 4.7 42.1 1.0 CB B:LEU24 4.8 41.8 1.0

N.K.Pandey, S.Ray, M.Suar, N.S.Bhavesh. Salmonella Typhimurium Virg-Like (Stv) Protein at at 2.19 Angstrom Resolution By Sad. To Be Published.